CPN2 (carboxypeptidase N subunit 2)

Gene: CPN2 (carboxypeptidase N subunit 2) Pan paniscus

Analyze

Symbol:

CPN2

Name:

carboxypeptidase N subunit 2

RGD ID:

12016307

Description:

FOUND IN extracellular matrix (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	192,262,625 - 192,274,017 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	192,267,347 - 192,278,739 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	191,637,388 - 191,648,283 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	201,951,777 - 201,962,455 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	201,952,336 - 201,953,973 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular matrix (IEA)

extracellular space (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CPN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	192,262,625 - 192,274,017 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	192,267,347 - 192,278,739 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	191,637,388 - 191,648,283 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	201,951,777 - 201,962,455 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	201,952,336 - 201,953,973 (-)	Ensembl	panpan1.1		panPan2

CPN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	194,339,768 - 194,351,328 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	194,339,768 - 194,351,328 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	194,060,497 - 194,072,057 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	195,542,189 - 195,553,350 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	195,542,203 - 195,545,138	NCBI
Celera	3	192,475,891 - 192,487,060 (-)	NCBI		Celera
Cytogenetic Map	3	q29	NCBI
HuRef	3	191,440,296 - 191,451,465 (-)	NCBI		HuRef
CHM1_1	3	194,023,464 - 194,034,921 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	197,038,329 - 197,049,487 (-)	NCBI		T2T-CHM13v2.0

Cpn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	30,075,196 - 30,086,350 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	30,075,196 - 30,086,317 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	30,256,378 - 30,267,532 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	30,256,378 - 30,267,499 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	30,256,464 - 30,267,618 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	30,178,417 - 30,187,279 (-)	NCBI		MGSCv36	mm8
Celera	16	30,763,276 - 30,774,455 (-)	NCBI		Celera
Cytogenetic Map	16	B2	NCBI
cM Map	16	21.22	NCBI

Cpn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	83,990,943 - 84,000,821 (+)	NCBI		GRCr8
mRatBN7.2	11	70,486,054 - 70,495,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	70,486,057 - 70,496,472 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	79,330,147 - 79,339,671 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	71,964,644 - 71,974,155 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	71,019,252 - 71,028,773 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	74,057,374 - 74,067,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	74,057,361 - 74,067,413 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	77,118,227 - 77,130,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	72,384,307 - 72,397,118 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	72,449,009 - 72,450,649 (+)	NCBI
Celera	11	69,459,269 - 69,468,738 (+)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

Cpn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	14,423,974 - 14,425,602 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	14,416,308 - 14,425,945 (+)	NCBI	ChiLan1.0	ChiLan1.0

CPN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	31,352,776 - 31,361,795 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	31,358,687 - 31,360,330 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	31,384,322 - 31,393,394 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	31,612,633 - 31,620,617 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	33	31,409,551 - 31,417,536 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	31,438,496 - 31,446,482 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	32,070,557 - 32,079,631 (+)	NCBI		UU_Cfam_GSD_1.0

Cpn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	123,789,200 - 123,799,858 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936711	457,291 - 458,934 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	131,325,065 - 131,337,672 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	131,327,508 - 131,337,721 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	140,825,627 - 140,827,536 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	88,437,471 - 88,448,351 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	88,437,957 - 88,439,594 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	62,124,306 - 62,134,673 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cpn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	63,420,457 - 63,422,085 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	63,414,147 - 63,424,071 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003807648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008959802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008959803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057301999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000022921 ⟹ ENSPPAP00000005002

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	201,952,336 - 201,953,973 (-)	Ensembl

RefSeq Acc Id:

XM_008959802 ⟹ XP_008958050

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	192,262,625 - 192,274,017 (-)	NCBI
NHGRI_mPanPan1	3	192,267,347 - 192,278,739 (-)	NCBI
Mhudiblu_PPA_v0	3	191,637,991 - 191,648,277 (-)	NCBI
PanPan1.1	3	201,952,025 - 201,962,449 (-)	NCBI

Sequence:

show sequence

TTGAGCTGACCACAGGCCACAGCAGACTCCTCTCTGCTCCTGAGGAAGACAGGGCAGCCCGGCG
CCACCCGCTCGGCCCTCACGAAGCTAACACGGCGGATAGACAAGCTCCCTCAGGCCTTTGCAAC
ATCACTGCCAGGAAGGAAAGAGTCAAAAGATGCTGCCTGGAGCCTGGCTGCTCTGGACCTCCCT
CCTGCTCCTGGCCAGGCCTGCCCAGCCCTGTCCCGTGGGTTGTGACTGCTTCTTCCAGGAGGTG
TTCTGCTCAGATGAGGAGCTGGCCACCGTCCCGCCCGACATCCCACCATATGCGAAAAACATCA
TCTTTGTGGAGACCTCGTTCACCACGTTGGAAACCAGAGCCTTTGGCAGCAACCCCAACTTGAC
CAAGGTGGTCTTCCTCAACACCCAGCTCTGCCAGTTTAGGCCGGATGCCTTCGGGGGGCTGCCC
AGGCTGGAGGACCTGGAGGTCACAGGCAGTAGCTTCTTGAACCTCAGCACCAACATCTTCTCCA
ACCTGACCTCGCTGGGCAAGCTCACCCTCAACTTCAACATGCTGGAGGCTCTGCCCGAGGGTCT
TTTCCAGCACCTGGCTGCCCTGGAGTCCCTCCACCTGCAGGGGAACCAGCTCCAGGCCCTGCCC
AGGAGGCTCTTCCAGCCTCTGACCCATCTGAAGACACTCAACCTGGCCCAGAACCTCCTGGCCC
AGCTCCCGGAGGAGCTGTTCCACCCACTCACCAGCCTGCAGACCCTGAAGCTGAGCAACAACGC
GCTCTCTGGTCTCCCCCAGGGTGTGTTTGGCAAACTGGGCAGCCTGCAGGAGCTCTTCCTGGAC
AGCAACAACATCTCGGAGCTGCCCCCTCAGGTGTTCTCCCAGCTCTTCTGCCTGGAGAGGCTGT
GGCTGCAACGCAACGCCATCACGCACCTGCCGCTCTCCATCTTTGCCTCCCTGGGTAATCTGAC
CTTTCTGAGCTTGCAGTGGAACATGCTTCGGGTCCTGCCTGCCGGCCTCTTTGCCCACACCCCA
TGCCTGGTTGGCCTGTCTCTGACCCATAACCAGCTGGAGACTGTCGCCGAGGGCGCCTTTGCCC
ACCTGTCCAAACTGCATTCCCTCATGCTCTCATACAATGCCATTACCCACCTCCCAGCTGGCAT
CTTCAGAGACCTGGAGGAGTTGGTCAAACTCTACCTGGGCAGCAACAACCTTACGGCGCTGCAC
CCAGCCCTCTTCCAGAACCTGTCCAAGCTGGAGCTGCTCAGCCTCTCCAAGAACCAGCTGACCA
CACTTCCGGAGGGCATCTTCGACACCAATTACAACCTGTTCAACCTGGCCCTGCACGGTAACCC
CTGGCAGTGTGACTGCCACCTGGCCTATCTCTTCAACTGGCTGCAGCAGTACACCGATCGGCTC
CTGAACATCCAGACCTACTGCGCCGGCCCTGCCTACCTCAAAGGCCAGGTGGTGCCCGCCTTGA
ATGAGAAGCAGCTGGTGTGTCCCGTCACCCGGGACCGCTTGGGCTTCCAGGTCACGTGGCTGGA
CGAAAGCAAGGCAGGGGGCAGCTGGGATCTGGCTGTGCAGGAAAGGGCAGCCCGGAGCCAGTGC
ACCTACAGCAACCCCGAGGGTACCGTGGTGCTCGCCTGTGACCAGGCCCAGTGTCGCTGGCTGA
ATGTCCAGCTCTCTCCTCGGCAGGGCTCCCTGGGACTGCAGTACAATGCTAGTCAGGAGTGGGA
CCTGAGGTCGAGCTGCGGTTCTCTGCGGCTCACCGTGTCTATCGAGGCTCGGGCAGCAGGGCCC
TAGTAGCAGCGCATACAGGAACTGGGGAAGGGGGCCTCTGGGGCCTGACCAGGCGACAGGTAGG
GGCAGAGGGGAGCTGAGTCTCCGAAGCCTTGGCTTTTCACCTGCAAGGGACAGGGTTACATCCC
CAAGGTGAGGGAGTGGAGTCTGGTCTGCTCCACTAACCAGGGTCTCCTCCTCCTCTTCCTTCAT
CGCTTCTCCTGGAGTGTGCGGCCTAACAAGGCCATCCTTATGCTTTGCAAAGCACCCTCAAAAG
CTGCACCACAGCCTGGAGAATAAAATATCCTCAGCCCTGATGCCTCCCCATTATGTAA

hide sequence

RefSeq Acc Id:

XM_057301999 ⟹ XP_057157982

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	192,262,625 - 192,274,017 (-)	NCBI
NHGRI_mPanPan1	3	192,267,347 - 192,278,739 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008958050	(Get FASTA)	NCBI Sequence Viewer
	XP_057157982	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005002.1

RefSeq Acc Id:

XP_008958050 ⟸ XM_008959802

- UniProtKB:

A0A2R8ZJ60 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLPGAWLLWTSLLLLARPAQPCPVGCDCFFQEVFCSDEELATVPPDIPPYAKNIIFVETSFTTL
ETRAFGSNPNLTKVVFLNTQLCQFRPDAFGGLPRLEDLEVTGSSFLNLSTNIFSNLTSLGKLTL
NFNMLEALPEGLFQHLAALESLHLQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPL
TSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHL
PLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGAFAHLSKLHSLML
SYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTN
YNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVVPALNEKQLVCPVT
RDRLGFQVTWLDESKAGGSWDLAVQERAARSQCTYSNPEGTVVLACDQAQCRWLNVQLSPRQGS
LGLQYNASQEWDLRSSCGSLRLTVSIEARAAGP

hide sequence

RefSeq Acc Id:

ENSPPAP00000005002 ⟸ ENSPPAT00000022921

RefSeq Acc Id:	XP_057157982 ⟸ XM_057301999
- UniProtKB:	A0A2R8ZJ60 (UniProtKB/TrEMBL)

Protein Domains

LRRCT LRRNT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000020911	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000022921.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
KEGG Report	pps:100974699	UniProtKB/TrEMBL
NCBI Gene	CPN2	ENTREZGENE
PANTHER	CARBOXYPEPTIDASE N SUBUNIT 2	UniProtKB/TrEMBL
	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_BAC	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZJ60	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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