TNFSF9 (TNF superfamily member 9) - Rat Genome Database

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Gene: TNFSF9 (TNF superfamily member 9) Pan paniscus
Analyze
Symbol: TNFSF9
Name: TNF superfamily member 9
RGD ID: 12003937
Description: ENCODES a protein that exhibits cytokine activity (inferred); signaling receptor binding (inferred); tumor necrosis factor receptor binding (inferred); INVOLVED IN myeloid dendritic cell differentiation (ortholog); positive regulation of activated T cell proliferation (ortholog); positive regulation of cytotoxic T cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); B-cell lymphoma (ortholog); colorectal cancer (ortholog); FOUND IN extracellular space (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor ligand superfamily member 9; tumor necrosis factor superfamily member 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,938,504 - 10,943,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,164,430 - 10,169,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,558,021 - 5,562,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,476,941 - 6,483,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,476,941 - 6,483,352 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFSF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,938,504 - 10,943,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,164,430 - 10,169,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,558,021 - 5,562,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,476,941 - 6,483,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,476,941 - 6,483,352 (+)Ensemblpanpan1.1panPan2
TNFSF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,531,026 - 6,535,924 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,531,026 - 6,535,924 (+)EnsemblGRCh38hg38GRCh38
GRCh37196,531,037 - 6,535,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,482,037 - 6,486,933 (+)NCBINCBI36Build 36hg18NCBI36
Build 34196,482,036 - 6,486,933NCBI
Celera196,470,827 - 6,475,769 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,293,216 - 6,297,937 (+)NCBIHuRef
CHM1_1196,530,958 - 6,535,882 (+)NCBICHM1_1
T2T-CHM13v2.0196,520,520 - 6,525,499 (+)NCBIT2T-CHM13v2.0
Tnfsf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,412,113 - 57,414,757 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,412,325 - 57,414,757 (+)EnsemblGRCm39 Ensembl
GRCm381757,105,287 - 57,107,758 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,105,325 - 57,107,757 (+)EnsemblGRCm38mm10GRCm38
MGSCv371757,244,808 - 57,247,180 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,790,776 - 56,792,848 (+)NCBIMGSCv36mm8
Celera1761,453,915 - 61,456,287 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.67NCBI
Tnfsf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,031,011 - 2,033,345 (+)NCBIGRCr8
mRatBN7.291,944,017 - 1,946,351 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,944,017 - 1,946,345 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,378,289 - 2,380,620 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0960,384 - 62,715 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,683,512 - 6,685,843 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,909,942 - 9,912,276 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,909,948 - 9,912,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,913,004 - 8,915,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,571,461 - 6,573,795 (-)NCBICelera
Cytogenetic Map9q11NCBI
Tnfsf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554953,101,965 - 3,107,552 (-)NCBIChiLan1.0ChiLan1.0
TNFSF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,680,882 - 53,682,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,679,880 - 53,682,706 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,426,553 - 53,439,382 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,333,423 - 54,336,590 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12053,400,156 - 53,403,326 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,848,757 - 53,851,741 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,077,742 - 54,080,911 (-)NCBIUU_Cfam_GSD_1.0
Tnfsf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,987,493 - 213,989,882 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365883,844,924 - 3,847,218 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,578,821 - 72,582,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,578,811 - 72,582,834 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,102,064 - 73,106,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFSF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,131,157 - 6,136,345 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,131,571 - 6,135,463 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,866,430 - 1,872,328 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfsf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,615,860 - 3,623,377 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034945456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000064580   ⟹   ENSPPAP00000041654
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl196,476,941 - 6,483,352 (+)Ensembl
RefSeq Acc Id: XM_034945456   ⟹   XP_034801347
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22010,938,504 - 10,943,394 (+)NCBI
NHGRI_mPanPan11910,164,430 - 10,169,327 (+)NCBI
Mhudiblu_PPA_v0195,558,021 - 5,562,901 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034801347 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041654.1
Reference Protein Sequences
RefSeq Acc Id: XP_034801347   ⟸   XM_034945456
- UniProtKB: A0A2R9CI89 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000041654   ⟸   ENSPPAT00000064580
Protein Domains
TNF family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064580.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNF_CS UniProtKB/TrEMBL
  TNF_dom UniProtKB/TrEMBL
  TNFSF9 UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene TNFSF9 ENTREZGENE
PANTHER PTHR15153 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 9 UniProtKB/TrEMBL
Pfam TNF UniProtKB/TrEMBL
PROSITE TNF_1 UniProtKB/TrEMBL
  TNF_2 UniProtKB/TrEMBL
SMART TNF UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A2R9CI89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 TNFSF9  TNF superfamily member 9    tumor necrosis factor superfamily member 9  Symbol and/or name change 5135510 APPROVED