KHNYN (KH and NYN domain containing) - Rat Genome Database

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Gene: KHNYN (KH and NYN domain containing) Pan paniscus
Analyze
Symbol: KHNYN
Name: KH and NYN domain containing
RGD ID: 11996462
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); RNA endonuclease activity (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,784,267 - 25,793,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11425,000,510 - 25,009,868 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,205,650 - 5,216,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,328,835 - 23,340,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,329,932 - 23,340,966 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
KHNYN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,784,267 - 25,793,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11425,000,510 - 25,009,868 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,205,650 - 5,216,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,328,835 - 23,340,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,329,932 - 23,340,966 (+)Ensemblpanpan1.1panPan2
KHNYN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,423,165 - 24,441,843 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,429,286 - 24,441,843 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,898,492 - 24,911,049 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,968,981 - 23,980,388 (+)NCBINCBI36Build 36hg18NCBI36
Build 341423,969,015 - 23,980,380NCBI
Celera144,763,777 - 4,775,184 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef145,013,796 - 5,025,205 (+)NCBIHuRef
CHM1_11424,897,714 - 24,909,123 (+)NCBICHM1_1
T2T-CHM13v2.01418,621,854 - 18,640,575 (+)NCBIT2T-CHM13v2.0
Khnyn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,122,269 - 56,136,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,122,404 - 56,136,232 (+)EnsemblGRCm39 Ensembl
GRCm381455,884,812 - 55,898,780 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,884,947 - 55,898,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,503,806 - 56,515,618 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,839,040 - 54,850,852 (+)NCBIMGSCv36mm8
Celera1453,688,754 - 53,700,503 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Khnyn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,335,290 - 33,349,553 (+)NCBIGRCr8
mRatBN7.21529,365,399 - 29,379,650 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,365,260 - 29,376,967 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01534,551,570 - 34,563,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,552,410 - 34,561,727 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,439,886 - 38,453,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41534,007,904 - 34,040,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1528,939,031 - 28,951,631 (+)NCBICelera
Cytogenetic Map15p13NCBI
Khnyn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,872,087 - 35,879,565 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540935,871,214 - 35,880,233 (-)NCBIChiLan1.0ChiLan1.0
KHNYN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,402,719 - 4,411,688 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,403,201 - 4,411,598 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,315,953 - 4,333,389 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,503,588 - 4,523,336 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,514,475 - 4,523,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,193,020 - 4,212,669 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,255,640 - 4,275,355 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,517,825 - 4,537,560 (+)NCBIUU_Cfam_GSD_1.0
Khnyn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,264,142 - 36,272,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722116,611 - 124,832 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722116,025 - 124,890 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHNYN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl774,854,379 - 74,874,882 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1774,854,209 - 74,872,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,125,232 - 80,136,080 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KHNYN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,412,264 - 1,420,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,413,306 - 1,419,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603613,098,182 - 13,110,195 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Khnyn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,075,413 - 8,084,232 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,074,069 - 8,084,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045595   ⟹   ENSPPAP00000022781
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1423,329,932 - 23,340,966 (+)Ensembl
RefSeq Acc Id: XM_057299825   ⟹   XP_057155808
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,784,267 - 25,793,374 (+)NCBI
NHGRI_mPanPan11425,000,510 - 25,009,868 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057155808 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022781.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000022781   ⟸   ENSPPAT00000045595
RefSeq Acc Id: XP_057155808   ⟸   XM_057299825
Protein Domains
RNase NYN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045595.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11980 UniProtKB/TrEMBL
InterPro KH_dom_type_1_sf UniProtKB/TrEMBL
  RNase_Zc3h12_NYN UniProtKB/TrEMBL
KEGG Report pps:100984944 UniProtKB/TrEMBL
NCBI Gene KHNYN ENTREZGENE
PANTHER N4BP1-RELATED UniProtKB/TrEMBL
  PROTEIN KHNYN UniProtKB/TrEMBL
Pfam RNase_Zc3h12a UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A2R9B623_PANPA UniProtKB/TrEMBL