EFCAB5 (EF-hand calcium binding domain 5) - Rat Genome Database

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Gene: EFCAB5 (EF-hand calcium binding domain 5) Pan paniscus
Analyze
Symbol: EFCAB5
Name: EF-hand calcium binding domain 5
RGD ID: 11986870
Description: ENCODES a protein that exhibits calcium ion binding (inferred); ASSOCIATED WITH neurofibromatosis 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand calcium-binding domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21934,342,633 - 34,527,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11736,223,206 - 36,410,394 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01726,661,188 - 26,846,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11727,179,510 - 27,364,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,179,510 - 27,352,621 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EFCAB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21934,342,633 - 34,527,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11736,223,206 - 36,410,394 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01726,661,188 - 26,846,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11727,179,510 - 27,364,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,179,510 - 27,352,621 (-)Ensemblpanpan1.1panPan2
EFCAB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,929,903 - 30,108,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,929,200 - 30,108,452 (+)EnsemblGRCh38hg38GRCh38
GRCh371728,256,921 - 28,435,470 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361725,292,812 - 25,459,596 (+)NCBINCBI36Build 36hg18NCBI36
Celera1725,116,847 - 25,297,005 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1724,466,461 - 24,645,857 (+)NCBIHuRef
CHM1_11728,319,344 - 28,497,966 (+)NCBICHM1_1
T2T-CHM13v2.01730,873,230 - 31,053,011 (+)NCBIT2T-CHM13v2.0
Efcab5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,980,236 - 77,106,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,980,741 - 77,079,794 (-)EnsemblGRCm39 Ensembl
GRCm381177,089,904 - 77,216,227 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,089,915 - 77,188,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,903,417 - 77,002,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,906,110 - 76,968,165 (-)NCBIMGSCv36mm8
Celera1184,588,147 - 84,687,633 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.25NCBI
Efcab5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81062,424,548 - 62,540,890 (-)NCBIGRCr8
mRatBN7.21061,926,419 - 62,042,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1061,926,953 - 62,042,749 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01062,970,645 - 63,086,704 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,981,297 - 63,085,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01062,667,812 - 62,784,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41066,770,464 - 66,846,773 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11066,784,344 - 66,860,573 (-)NCBI
Celera1060,933,235 - 61,047,411 (-)NCBICelera
Cytogenetic Map10q24NCBI
Efcab5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,208,190 - 3,356,686 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,207,789 - 3,381,228 (-)NCBIChiLan1.0ChiLan1.0
EFCAB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,965,945 - 44,147,530 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,992,000 - 44,147,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha943,117,999 - 43,299,226 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0944,780,929 - 44,965,654 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,780,970 - 44,965,977 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1943,565,412 - 43,746,667 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,856,366 - 44,033,229 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,936,399 - 44,117,709 (+)NCBIUU_Cfam_GSD_1.0
Efcab5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560243,126,616 - 43,254,273 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365386,001,412 - 6,131,835 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,085,521 - 46,205,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,085,215 - 46,204,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,293,563 - 48,344,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,666,814 - 23,845,314 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1623,762,444 - 23,844,886 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660756,220,940 - 6,391,390 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efcab5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247862,438,922 - 2,588,830 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034942144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034942153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000060304   ⟹   ENSPPAP00000037404
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1727,179,510 - 27,352,621 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000060313   ⟹   ENSPPAP00000037413
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1727,216,319 - 27,350,487 (-)Ensembl
RefSeq Acc Id: XM_034942144   ⟹   XP_034798035
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,633 - 34,527,874 (-)NCBI
NHGRI_mPanPan11736,223,206 - 36,410,146 (-)NCBI
Mhudiblu_PPA_v01726,661,390 - 26,846,220 (-)NCBI
RefSeq Acc Id: XM_055101352   ⟹   XP_054957327
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,633 - 34,525,705 (-)NCBI
NHGRI_mPanPan11736,223,206 - 36,398,871 (-)NCBI
RefSeq Acc Id: XM_055101353   ⟹   XP_054957328
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,357,842 - 34,525,706 (-)NCBI
NHGRI_mPanPan11736,238,207 - 36,398,872 (-)NCBI
RefSeq Acc Id: XM_063599154   ⟹   XP_063455224
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,633 - 34,525,705 (-)NCBI
RefSeq Acc Id: XM_063599155   ⟹   XP_063455225
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,634 - 34,527,874 (-)NCBI
RefSeq Acc Id: XM_063599156   ⟹   XP_063455226
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,634 - 34,515,590 (-)NCBI
RefSeq Acc Id: XM_063599157   ⟹   XP_063455227
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21934,342,635 - 34,527,873 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034798035   ⟸   XM_034942144
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000037404   ⟸   ENSPPAT00000060304
RefSeq Acc Id: ENSPPAP00000037413   ⟸   ENSPPAT00000060313
RefSeq Acc Id: XP_054957327   ⟸   XM_055101352
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054957328   ⟸   XM_055101353
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063455224   ⟸   XM_063599154
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455225   ⟸   XM_063599155
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063455226   ⟸   XM_063599156
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063455227   ⟸   XM_063599157
- Peptide Label: isoform X6
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041466 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060304.1 UniProtKB/TrEMBL
  ENSPPAT00000060313.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.40 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  GAF-like_dom_sf UniProtKB/TrEMBL
NCBI Gene EFCAB5 ENTREZGENE
PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP GAF domain-like UniProtKB/TrEMBL
UniProt A0A2R9C6H6_PANPA UniProtKB/TrEMBL
  A0A2R9C8Z5_PANPA UniProtKB/TrEMBL