ARHGEF6 (Rac/Cdc42 guanine nucleotide exchange factor 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ARHGEF6 (Rac/Cdc42 guanine nucleotide exchange factor 6) Pan paniscus
Analyze
Symbol: ARHGEF6
Name: Rac/Cdc42 guanine nucleotide exchange factor 6
RGD ID: 11974952
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN intracellular signal transduction (inferred); lamellipodium assembly (inferred); ASSOCIATED WITH autistic disorder (ortholog); Christianson syndrome (ortholog); Chromosome Xq26.3 Duplication Syndrome (ortholog); FOUND IN cell-cell junction (inferred); cytoplasm (inferred); lamellipodium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho guanine nucleotide exchange factor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X136,083,897 - 136,200,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X136,087,494 - 136,203,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,794,158 - 125,909,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X136,060,652 - 136,176,571 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX136,058,879 - 136,176,110 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARHGEF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X136,083,897 - 136,200,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X136,087,494 - 136,203,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,794,158 - 125,909,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X136,060,652 - 136,176,571 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX136,058,879 - 136,176,110 (-)Ensemblpanpan1.1panPan2
ARHGEF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,665,550 - 136,780,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,665,547 - 136,780,932 (-)EnsemblGRCh38hg38GRCh38
GRCh37X135,747,709 - 135,863,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,575,375 - 135,691,169 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X135,473,232 - 135,589,023NCBI
CeleraX136,111,384 - 136,227,182 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX125,018,703 - 125,134,374 (-)NCBIHuRef
CHM1_1X135,659,375 - 135,775,269 (-)NCBICHM1_1
T2T-CHM13v2.0X134,974,276 - 135,089,655 (-)NCBIT2T-CHM13v2.0
Arhgef6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,276,845 - 56,384,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,276,845 - 56,384,089 (-)EnsemblGRCm39 Ensembl
GRCm38X57,231,485 - 57,338,758 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,231,485 - 57,338,729 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X54,484,662 - 54,591,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,578,271 - 53,685,513 (-)NCBIMGSCv36mm8
CeleraX43,709,095 - 43,814,976 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX31.26NCBI
Arhgef6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,182,734 - 140,302,812 (-)NCBIGRCr8
mRatBN7.2X135,145,447 - 135,264,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX135,146,786 - 135,275,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX137,344,314 - 137,461,067 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X140,901,995 - 141,018,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X138,471,394 - 138,588,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X159,722,031 - 159,841,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,723,866 - 159,841,072 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X154,351,133 - 154,467,649 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,946,362 - 142,068,557 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X142,019,794 - 142,141,990 (-)NCBI
CeleraX143,180,944 - 143,297,823 (-)NCBICelera
Cytogenetic MapXq36NCBI
Arhgef6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554898,360,072 - 8,459,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554898,360,027 - 8,459,309 (+)NCBIChiLan1.0ChiLan1.0
ARHGEF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X107,031,586 - 107,133,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX107,034,118 - 107,133,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,853,143 - 92,954,592 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X109,011,566 - 109,112,628 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX109,011,570 - 109,112,366 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,152,309 - 106,253,330 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,343,657 - 108,445,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,985,467 - 108,087,145 (-)NCBIUU_Cfam_GSD_1.0
Arhgef6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X105,016,252 - 105,126,029 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,488,532 - 10,598,493 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,488,525 - 10,598,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,796,485 - 111,917,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,796,485 - 111,917,195 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,658,249 - 127,763,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,672,701 - 111,793,597 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX111,672,713 - 111,792,856 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606549,359,175 - 49,486,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480810,319,793 - 10,465,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480810,320,388 - 10,464,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000033650   ⟹   ENSPPAP00000010995
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX136,058,879 - 136,176,110 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033656   ⟹   ENSPPAP00000011001
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX136,058,879 - 136,176,110 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000033670   ⟹   ENSPPAP00000011015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX136,063,132 - 136,176,110 (-)Ensembl
RefSeq Acc Id: XM_003812320   ⟹   XP_003812368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,200,095 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,203,389 (-)NCBI
Mhudiblu_PPA_v0X125,794,161 - 125,909,809 (-)NCBI
PanPan1.1X136,060,653 - 136,176,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034949540   ⟹   XP_034805431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,200,099 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,203,400 (-)NCBI
Mhudiblu_PPA_v0X125,794,158 - 125,909,791 (-)NCBI
RefSeq Acc Id: XM_034949541   ⟹   XP_034805432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,200,095 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,203,394 (-)NCBI
Mhudiblu_PPA_v0X125,794,158 - 125,909,789 (-)NCBI
RefSeq Acc Id: XM_034949542   ⟹   XP_034805433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,200,098 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,203,399 (-)NCBI
Mhudiblu_PPA_v0X125,794,158 - 125,909,791 (-)NCBI
RefSeq Acc Id: XM_034949543   ⟹   XP_034805434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,186,657 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,190,271 (-)NCBI
Mhudiblu_PPA_v0X125,794,158 - 125,896,868 (-)NCBI
RefSeq Acc Id: XM_055106180   ⟹   XP_054962155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,186,657 (-)NCBI
NHGRI_mPanPan1X136,087,494 - 136,190,271 (-)NCBI
RefSeq Acc Id: XM_063601702   ⟹   XP_063457772
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X136,083,897 - 136,186,640 (-)NCBI
RefSeq Acc Id: XP_003812368   ⟸   XM_003812320
- Peptide Label: isoform X3
- UniProtKB: A0A2R9A5M1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034805433   ⟸   XM_034949542
- Peptide Label: isoform X4
- UniProtKB: A0A2R9A5M1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805431   ⟸   XM_034949540
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A5M1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805432   ⟸   XM_034949541
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A5J8 (UniProtKB/TrEMBL),   A0A2R9A5M1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805434   ⟸   XM_034949543
- Peptide Label: isoform X7
RefSeq Acc Id: ENSPPAP00000011001   ⟸   ENSPPAT00000033656
RefSeq Acc Id: ENSPPAP00000010995   ⟸   ENSPPAT00000033650
RefSeq Acc Id: ENSPPAP00000011015   ⟸   ENSPPAT00000033670
RefSeq Acc Id: XP_054962155   ⟸   XM_055106180
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063457772   ⟸   XM_063601702
- Peptide Label: isoform X6
Protein Domains
Calponin-homology (CH)   DH   PH   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028700 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033650.1 UniProtKB/TrEMBL
  ENSPPAT00000033656.1 UniProtKB/TrEMBL
  ENSPPAT00000033670.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  L1 transposable element, trimerization domain UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AlphaPIX_SH3 UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  GEF_CC UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_Cool_Pix UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene ARHGEF6 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 6 UniProtKB/TrEMBL
  RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F UniProtKB/TrEMBL
Pfam betaPIX_CC UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  RhoGEF67_u1 UniProtKB/TrEMBL
  RhoGEF67_u2 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A2R9A5J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A5M1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6M9_PANPA UniProtKB/TrEMBL