LAMB4 (laminin subunit beta 4) - Rat Genome Database

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Gene: LAMB4 (laminin subunit beta 4) Pan paniscus
Analyze
Symbol: LAMB4
Name: laminin subunit beta 4
RGD ID: 11965847
Description: INVOLVED IN animal organ morphogenesis (inferred); basement membrane assembly (inferred); cell migration (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN basement membrane (inferred); laminin complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: laminin subunit beta-4
RGD Orthologs
Human
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,869,783 - 144,976,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,139,752 - 193,246,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07100,005,662 - 100,112,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,727,343 - 112,825,707 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,727,343 - 112,825,707 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LAMB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,869,783 - 144,976,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,139,752 - 193,246,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07100,005,662 - 100,112,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,727,343 - 112,825,707 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,727,343 - 112,825,707 (-)Ensemblpanpan1.1panPan2
LAMB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387108,011,662 - 108,130,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7108,023,548 - 108,130,361 (-)EnsemblGRCh38hg38GRCh38
GRCh377107,663,998 - 107,770,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,451,232 - 107,558,037 (-)NCBINCBI36Build 36hg18NCBI36
Celera7102,470,963 - 102,577,805 (-)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7102,026,492 - 102,133,100 (-)NCBIHuRef
CHM1_17107,597,688 - 107,704,521 (-)NCBICHM1_1
T2T-CHM13v2.07109,329,907 - 109,448,507 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27107,025,127 - 107,131,988 (-)NCBI
LAMB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,517,124 - 12,609,253 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,509,774 - 12,608,862 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,153,298 - 12,253,263 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,780,535 - 12,880,553 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,788,740 - 12,880,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,597,419 - 12,697,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,517,986 - 12,617,800 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,745,514 - 12,845,482 (+)NCBIUU_Cfam_GSD_1.0
Lamb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,925,252 - 55,032,442 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,070,651 - 16,156,535 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,049,074 - 16,156,147 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,778,499 - 107,880,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,777,842 - 107,899,725 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,545,930 - 118,666,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,937,770 - 77,053,619 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,937,790 - 77,040,725 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604226,819,144 - 26,925,810 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473921,655,896 - 21,754,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000054135   ⟹   ENSPPAP00000031271
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7112,727,343 - 112,825,707 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000054141   ⟹   ENSPPAP00000031276
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7112,727,343 - 112,820,843 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000054144   ⟹   ENSPPAP00000031280
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7112,778,099 - 112,820,843 (-)Ensembl
RefSeq Acc Id: XM_034964769   ⟹   XP_034820660
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26144,869,783 - 144,976,288 (-)NCBI
NHGRI_mPanPan17193,139,752 - 193,246,258 (-)NCBI
Mhudiblu_PPA_v07100,005,662 - 100,112,128 (-)NCBI
RefSeq Acc Id: XM_034964770   ⟹   XP_034820661
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26144,921,591 - 144,976,288 (-)NCBI
NHGRI_mPanPan17193,191,561 - 193,246,258 (-)NCBI
Mhudiblu_PPA_v07100,057,473 - 100,112,128 (-)NCBI
RefSeq Acc Id: XM_057302932   ⟹   XP_057158915
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26144,869,783 - 144,976,288 (-)NCBI
NHGRI_mPanPan17193,139,752 - 193,246,258 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034820660 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820661 (Get FASTA)   NCBI Sequence Viewer  
  XP_057158915 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031271.1
  ENSPPAP00000031276.1
  ENSPPAP00000031280.1
Reference Protein Sequences
RefSeq Acc Id: XP_034820660   ⟸   XM_034964769
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BNN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034820661   ⟸   XM_034964770
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BNN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000031271   ⟸   ENSPPAT00000054135
RefSeq Acc Id: ENSPPAP00000031276   ⟸   ENSPPAT00000054141
RefSeq Acc Id: ENSPPAP00000031280   ⟸   ENSPPAT00000054144
RefSeq Acc Id: XP_057158915   ⟸   XM_057302932
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BNN3 (UniProtKB/TrEMBL)
Protein Domains
Laminin EGF-like   Laminin IV type B   Laminin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038537 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054135.1 UniProtKB/TrEMBL
  ENSPPAT00000054141.1 UniProtKB/TrEMBL
  ENSPPAT00000054144.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV_B UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
NCBI Gene LAMB4 ENTREZGENE
PANTHER LAMININ SUBUNIT BETA-4 UniProtKB/TrEMBL
  LAMININ SUBUNIT GAMMA-1 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  LAMININ_IV_B UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_IVB UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A2R9BNN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BNN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BNN9_PANPA UniProtKB/TrEMBL