ZKSCAN3 (zinc finger with KRAB and SCAN domains 3) - Rat Genome Database

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Gene: ZKSCAN3 (zinc finger with KRAB and SCAN domains 3) Pan paniscus
Analyze
Symbol: ZKSCAN3
Name: zinc finger with KRAB and SCAN domains 3
RGD ID: 11954356
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN chromatin remodeling (inferred); lysosome organization (inferred); negative regulation of autophagy (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); megacolon (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein with KRAB and SCAN domains 3
RGD Orthologs
Human
Mouse
Rat
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,971,264 - 42,990,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,972,274 - 38,995,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,157,736 - 28,174,906 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,828,297 - 28,847,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,828,298 - 28,847,596 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZKSCAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,971,264 - 42,990,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,972,274 - 38,995,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,157,736 - 28,174,906 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,828,297 - 28,847,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,828,298 - 28,847,596 (+)Ensemblpanpan1.1panPan2
ZKSCAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,349,878 - 28,369,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,349,947 - 28,369,172 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,317,724 - 28,336,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,425,738 - 28,442,503 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,425,737 - 28,442,502NCBI
Celera629,924,132 - 29,940,962 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,124,766 - 28,144,005 (+)NCBIHuRef
CHM1_1628,320,076 - 28,339,339 (+)NCBICHM1_1
T2T-CHM13v2.0628,221,444 - 28,240,735 (+)NCBIT2T-CHM13v2.0
Zkscan3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,571,174 - 21,586,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,571,173 - 21,586,925 (-)EnsemblGRCm39 Ensembl
GRCm381321,387,004 - 21,402,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,387,003 - 21,402,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv371321,478,873 - 21,494,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,394,546 - 21,412,211 (-)NCBIMGSCv36mm8
Celera1321,652,946 - 21,668,698 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.78NCBI
Zkscan3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,912,816 - 47,928,553 (+)NCBIGRCr8
mRatBN7.21743,217,168 - 43,232,828 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,217,222 - 43,232,827 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,274,623 - 45,290,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01750,033,731 - 50,049,344 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,524,146 - 44,539,759 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,247,724 - 45,263,422 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,247,776 - 45,263,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,204,677 - 58,220,555 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,862,534 - 50,901,252 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,865,374 - 50,880,759 (+)NCBI
Celera1753,235,157 - 53,250,769 (-)NCBICelera
Cytogenetic Map17p11NCBI
Zkscan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,778,053 - 28,795,403 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493677243 - 7,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZKSCAN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,199,513 - 44,216,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,200,164 - 44,216,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604428,042,781 - 28,062,276 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000053946   ⟹   ENSPPAP00000031082
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl628,828,298 - 28,847,596 (+)Ensembl
RefSeq Acc Id: XM_003829667   ⟹   XP_003829715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,971,265 - 42,990,882 (+)NCBI
NHGRI_mPanPan1638,972,274 - 38,995,206 (+)NCBI
Mhudiblu_PPA_v0628,157,737 - 28,174,906 (+)NCBI
PanPan1.1628,828,298 - 28,847,596 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008955060   ⟹   XP_008953308
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,981,572 - 42,990,882 (+)NCBI
NHGRI_mPanPan1638,982,549 - 38,995,206 (+)NCBI
Mhudiblu_PPA_v0628,168,030 - 28,174,906 (+)NCBI
PanPan1.1628,838,353 - 28,847,596 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034961642   ⟹   XP_034817533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,971,752 - 42,990,882 (+)NCBI
NHGRI_mPanPan1638,972,732 - 38,995,206 (+)NCBI
Mhudiblu_PPA_v0628,158,206 - 28,174,906 (+)NCBI
RefSeq Acc Id: XM_063605217   ⟹   XP_063461287
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,971,264 - 42,990,882 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003829715 (Get FASTA)   NCBI Sequence Viewer  
  XP_008953308 (Get FASTA)   NCBI Sequence Viewer  
  XP_034817533 (Get FASTA)   NCBI Sequence Viewer  
  XP_063461287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031082.1
Reference Protein Sequences
RefSeq Acc Id: XP_003829715   ⟸   XM_003829667
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BX51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008953308   ⟸   XM_008955060
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034817533   ⟸   XM_034961642
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000031082   ⟸   ENSPPAT00000053946
RefSeq Acc Id: XP_063461287   ⟸   XM_063605217
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BX51 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038485 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053946.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100980951 UniProtKB/TrEMBL
NCBI Gene ZKSCAN3 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9 UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BX51 ENTREZGENE, UniProtKB/TrEMBL