KCND1 (potassium voltage-gated channel subfamily D member 1) - Rat Genome Database

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Gene: KCND1 (potassium voltage-gated channel subfamily D member 1) Pan paniscus
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Symbol: KCND1
Name: potassium voltage-gated channel subfamily D member 1
RGD ID: 11953137
Description: ENCODES a protein that exhibits A-type (transient outward) potassium channel activity (inferred); potassium channel activity (inferred); voltage-gated potassium channel activity (inferred); INVOLVED IN potassium ion transmembrane transport (inferred); potassium ion transport (inferred); protein homooligomerization (inferred); PARTICIPATES IN excitatory synaptic transmission pathway; long term potentiation; ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Dwarfism (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, Shal-related subfamily, member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,450,474 - 50,462,727 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,453,846 - 50,465,168 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,258,803 - 41,270,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,115,933 - 49,127,030 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,115,933 - 49,127,030 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,450,474 - 50,462,727 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,453,846 - 50,465,168 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,258,803 - 41,270,036 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,115,933 - 49,127,030 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,115,933 - 49,127,030 (-)Ensemblpanpan1.1panPan2
KCND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,961,380 - 48,971,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,961,378 - 48,971,844 (-)EnsemblGRCh38hg38GRCh38
GRCh37X48,818,641 - 48,828,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,703,583 - 48,713,195 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,574,886 - 48,584,499NCBI
CeleraX52,835,266 - 52,844,878 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,474,963 - 46,485,532 (-)NCBIHuRef
CHM1_1X48,849,929 - 48,859,553 (-)NCBICHM1_1
T2T-CHM13v2.0X48,371,842 - 48,382,307 (-)NCBIT2T-CHM13v2.0
Kcnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,686,907 - 7,704,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,688,528 - 7,704,519 (+)EnsemblGRCm39 Ensembl
GRCm38X7,823,759 - 7,838,278 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,822,289 - 7,838,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,400,969 - 7,413,629 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,980,802 - 6,993,462 (+)NCBIMGSCv36mm8
CeleraX3,633,556 - 3,646,421 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.53NCBI
Kcnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,333,612 - 17,349,255 (-)NCBIGRCr8
mRatBN7.2X14,661,688 - 14,678,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,662,357 - 14,677,233 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,475,242 - 19,489,227 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,593,884 - 20,607,869 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,859,053 - 16,873,038 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,506,724 - 15,520,712 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,506,724 - 15,520,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,287,959 - 16,301,947 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,696,234 - 26,710,222 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,750,502 - 26,763,223 (-)NCBI
CeleraX14,746,408 - 14,760,394 (-)NCBICelera
Cytogenetic MapXq12NCBI
Kcnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543487,312 - 498,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543487,312 - 500,232 (-)NCBIChiLan1.0ChiLan1.0
KCND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,111,817 - 42,119,939 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,111,837 - 42,118,375 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,487,092 - 16,495,610 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,247,518 - 42,256,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,245,861 - 42,254,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,234,071 - 42,242,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,221,985 - 42,230,798 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,316,221 - 42,325,034 (-)NCBIUU_Cfam_GSD_1.0
Kcnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,640,399 - 34,650,768 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721880,774 - 889,874 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721881,162 - 890,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,032,358 - 43,041,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,032,355 - 43,043,310 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,770,985 - 47,780,563 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,080,116 - 46,092,125 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,081,711 - 46,089,762 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,565,823 - 11,577,277 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893739,977 - 751,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893739,980 - 752,924 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046525   ⟹   ENSPPAP00000023700
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,115,933 - 49,127,030 (-)Ensembl
RefSeq Acc Id: XM_014343431   ⟹   XP_014198917
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,450,474 - 50,462,727 (-)NCBI
NHGRI_mPanPan1X50,453,846 - 50,465,168 (-)NCBI
Mhudiblu_PPA_v0X41,258,803 - 41,270,036 (-)NCBI
PanPan1.1X49,115,933 - 49,127,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034950547   ⟹   XP_034806438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,450,474 - 50,461,791 (-)NCBI
NHGRI_mPanPan1X50,453,846 - 50,465,168 (-)NCBI
Mhudiblu_PPA_v0X41,258,803 - 41,270,036 (-)NCBI
RefSeq Acc Id: XM_055106919   ⟹   XP_054962894
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,455,658 - 50,461,791 (-)NCBI
NHGRI_mPanPan1X50,459,032 - 50,465,168 (-)NCBI
RefSeq Acc Id: XM_063601623   ⟹   XP_063457693
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,450,474 - 50,461,791 (-)NCBI
Protein Sequences
Protein RefSeqs XP_014198917 (Get FASTA)   NCBI Sequence Viewer  
  XP_034806438 (Get FASTA)   NCBI Sequence Viewer  
  XP_054962894 (Get FASTA)   NCBI Sequence Viewer  
  XP_063457693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023700
  ENSPPAP00000023700.1
Reference Protein Sequences
RefSeq Acc Id: XP_014198917   ⟸   XM_014343431
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B401 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034806438   ⟸   XM_034950547
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000023700   ⟸   ENSPPAT00000046525
RefSeq Acc Id: XP_054962894   ⟸   XM_055106919
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063457693   ⟸   XM_063601623
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B401 (UniProtKB/TrEMBL)
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035010 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046525.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv4 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv4.1 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv4_C UniProtKB/TrEMBL
  Shal-type_N UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100983577 UniProtKB/TrEMBL
NCBI Gene KCND1 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY D MEMBER 1 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  DUF3399 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  Shal-type UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV41CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
  SHALCHANNEL UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A2R9B401 ENTREZGENE, UniProtKB/TrEMBL