RETNLB (resistin like beta) - Rat Genome Database

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Pathways
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Gene: RETNLB (resistin like beta) Pan paniscus
Analyze
Symbol: RETNLB
Name: resistin like beta
RGD ID: 11950749
Description: ENCODES a protein that exhibits hormone activity (inferred); INVOLVED IN response to bacterium (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: resistin-like beta
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,732,379 - 106,734,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,737,158 - 106,738,916 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,881,419 - 105,882,812 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,812,103 - 112,813,734 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,812,103 - 112,813,734 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RETNLB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,732,379 - 106,734,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,737,158 - 106,738,916 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,881,419 - 105,882,812 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,812,103 - 112,813,734 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,812,103 - 112,813,734 (-)Ensemblpanpan1.1panPan2
RETNLB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,755,638 - 108,757,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,743,424 - 108,757,410 (-)EnsemblGRCh38hg38GRCh38
GRCh373108,474,485 - 108,476,257 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363109,957,176 - 109,958,820 (-)NCBINCBI36Build 36hg18NCBI36
Build 343109,956,502 - 109,958,820NCBI
Celera3106,871,477 - 106,873,121 (-)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3105,848,267 - 105,849,911 (-)NCBIHuRef
CHM1_13108,438,568 - 108,440,212 (-)NCBICHM1_1
T2T-CHM13v2.03111,476,011 - 111,477,791 (-)NCBIT2T-CHM13v2.0
Retnlb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,637,219 - 48,639,255 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,637,219 - 48,639,255 (+)EnsemblGRCm39 Ensembl
GRCm381648,816,856 - 48,818,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,816,856 - 48,818,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371648,816,969 - 48,819,005 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,736,482 - 48,738,518 (+)NCBIMGSCv36mm8
Celera1649,177,733 - 49,179,773 (+)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
Retnlb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,446,433 - 65,448,319 (-)NCBIGRCr8
mRatBN7.21151,983,482 - 51,985,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,983,483 - 51,985,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,746,551 - 60,748,437 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,408,333 - 53,410,219 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,513,099 - 52,514,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01154,565,471 - 54,567,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,565,472 - 54,567,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,727,746 - 57,729,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,226,992 - 53,228,878 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1151,583,301 - 51,585,187 (-)NCBICelera
Cytogenetic Map11q21NCBI
RETNLB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13313,980,710 - 13,982,586 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3314,086,218 - 14,088,141 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03314,146,376 - 14,148,256 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13314,015,664 - 14,017,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03314,082,060 - 14,083,984 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,494,347 - 14,496,270 (-)NCBIUU_Cfam_GSD_1.0
Retnlb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,442,139 - 140,444,628 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366452,400,948 - 2,403,686 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366452,400,948 - 2,403,714 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RETNLB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,716,889 - 150,718,395 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,716,863 - 150,718,405 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213159,846,269 - 159,847,801 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RETNLB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,039,331 - 72,046,810 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,040,456 - 72,041,825 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604194,428,198 - 94,429,783 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000045269   ⟹   ENSPPAP00000022459
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3112,812,103 - 112,813,734 (-)Ensembl
RefSeq Acc Id: XM_003825063   ⟹   XP_003825111
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22106,732,379 - 106,734,137 (-)NCBI
NHGRI_mPanPan13106,737,158 - 106,738,916 (-)NCBI
Mhudiblu_PPA_v03105,881,419 - 105,882,812 (-)NCBI
PanPan1.13112,812,103 - 112,813,734 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003825111 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022459.1
Reference Protein Sequences
RefSeq Acc Id: XP_003825111   ⟸   XM_003825063
- UniProtKB: A0A2R9AYS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000022459   ⟸   ENSPPAT00000045269


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034427 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045269.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.4230 UniProtKB/TrEMBL
InterPro RELM UniProtKB/TrEMBL
  Resistin-like_sf UniProtKB/TrEMBL
KEGG Report pps:100990671 UniProtKB/TrEMBL
NCBI Gene RETNLB ENTREZGENE
PANTHER PTHR21101 UniProtKB/TrEMBL
  RESISTIN-LIKE BETA UniProtKB/TrEMBL
Pfam Resistin UniProtKB/TrEMBL
Superfamily-SCOP SSF111423 UniProtKB/TrEMBL
UniProt A0A2R9AYS5 ENTREZGENE, UniProtKB/TrEMBL