SEMA3F (semaphorin 3F) - Rat Genome Database

Name: SEMA3F
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SEMA3F (semaphorin 3F) Pan paniscus

Analyze

Symbol:

SEMA3F

Name:

semaphorin 3F

RGD ID:

11945521

Description:

ENCODES a protein that exhibits chemorepellent activity (inferred); semaphorin receptor binding (inferred); signaling receptor binding (inferred); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); negative chemotaxis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

semaphorin-3F

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEMA3F (semaphorin 3F)	NCBI	Ortholog
Mus musculus (house mouse):	Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEMA3F (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sema3f (semaphorin 3F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,138,188 - 50,171,978 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,143,073 - 50,176,753 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,083,733 - 50,117,518 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,318,089 - 51,351,958 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,318,089 - 51,351,958 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 1 (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Endometrial Neoplasms (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

hypogonadotropic hypogonadism (ISO)

Klinefelter syndrome (ISO)

primary ciliary dyskinesia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon extension involved in axon guidance (IEA,ISO)

axon guidance (IEA,ISO)

branchiomotor neuron axon guidance (IEA)

facial nerve structural organization (IEA)

negative chemotaxis (IEA,ISO)

negative regulation of axon extension involved in axon guidance (IEA,ISO)

nerve development (IEA)

neural crest cell migration (IEA)

neural crest cell migration involved in autonomic nervous system development (IEA)

positive regulation of cell migration (IEA)

regulation of postsynapse organization (IEA)

semaphorin-plexin signaling pathway (IEA)

signal transduction (IEA)

sympathetic ganglion development (IEA)

sympathetic neuron projection extension (IEA)

sympathetic neuron projection guidance (IEA)

system development (IEA)

trigeminal nerve structural organization (IEA)

trunk neural crest cell migration (IEA,ISO)

ventral trunk neural crest cell migration (IEA)

Cellular Component

extracellular space (IEA)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

Molecular Function

chemorepellent activity (IEA)

semaphorin receptor binding (IEA)

signaling receptor binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SEMA3F
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,138,188 - 50,171,978 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,143,073 - 50,176,753 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,083,733 - 50,117,518 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,318,089 - 51,351,958 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,318,089 - 51,351,958 (+)	Ensembl	panpan1.1		panPan2

SEMA3F
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	50,155,058 - 50,189,075 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	50,155,045 - 50,189,075 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	50,192,491 - 50,226,508 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	50,167,852 - 50,201,512 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	50,167,851 - 50,201,511	NCBI
Celera	3	50,165,676 - 50,199,339 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,248,557 - 50,282,194 (+)	NCBI		HuRef
CHM1_1	3	50,145,118 - 50,178,783 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	50,184,392 - 50,218,408 (+)	NCBI		T2T-CHM13v2.0

Sema3f
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,558,698 - 107,587,674 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,558,699 - 107,587,674 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	107,681,499 - 107,710,475 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,681,500 - 107,710,475 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	107,583,833 - 107,612,806 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,539,603 - 107,568,576 (-)	NCBI		MGSCv36	mm8
Celera	9	107,287,142 - 107,316,223 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	58.91	NCBI

Sema3f
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,236,269 - 117,265,206 (-)	NCBI		GRCr8
mRatBN7.2	8	108,357,629 - 108,386,569 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,357,629 - 108,387,083 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	113,984,571 - 114,014,000 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,183,731 - 112,213,160 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,026,513 - 110,055,942 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,439,996 - 116,469,915 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,437,696 - 116,469,915 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	115,795,106 - 115,824,684 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	112,932,112 - 112,962,333 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	112,951,566 - 112,982,883 (-)	NCBI
Celera	8	107,663,870 - 107,693,466 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Sema3f
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,988,486 - 2,017,170 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,992,417 - 2,015,879 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEMA3F
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,135,580 - 39,165,381 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,136,523 - 39,161,325 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,056,637 - 39,085,160 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,491,876 - 39,521,715 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,491,886 - 39,522,414 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,859,427 - 38,889,253 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,263,538 - 39,293,588 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,543,271 - 39,573,112 (-)	NCBI		UU_Cfam_GSD_1.0

Sema3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,944,032 - 64,972,968 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,704,476 - 1,733,941 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,704,523 - 1,733,465 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA3F
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,641,424 - 32,671,223 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	32,641,376 - 32,671,231 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,820,323 - 35,849,831 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEMA3F
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,540,958 - 11,574,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,545,455 - 11,575,006 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	155,411,362 - 155,445,307 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sema3f
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	4,035,874 - 4,065,667 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	4,035,909 - 4,064,796 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008972234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000060442 ⟹ ENSPPAP00000037542

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	51,318,089 - 51,351,958 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000060447 ⟹ ENSPPAP00000037547

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	51,318,089 - 51,351,958 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000060459 ⟹ ENSPPAP00000037559

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	51,322,234 - 51,350,997 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000060467 ⟹ ENSPPAP00000037567

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	51,336,502 - 51,350,997 (+)	Ensembl

RefSeq Acc Id:

XM_003818834 ⟹ XP_003818882

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	50,138,188 - 50,171,978 (+)	NCBI
NHGRI_mPanPan1	3	50,143,073 - 50,176,753 (+)	NCBI
Mhudiblu_PPA_v0	3	50,083,733 - 50,117,518 (+)	NCBI
PanPan1.1	3	51,318,089 - 51,351,958 (+)	NCBI

Sequence:

show sequence

GGGGCCGCTAGCGCGGACCGGCCCAACGGGAGCCGCTCCGTGCCGCCGCCGCCGCCCGGGCGCC
CAGGCCCCGCCGCTGCGGAAGAGGTTTCTAGAGAGTGGAGCCTGCTTCCTGGGCCCTAGGCCCC
TCCCACAATGCTTGTCGCCGGTCTTCTCCTCTGGGCTTCCCTACTGACTGGGGCCTGGCCATCC
TTCCCCACCCAGGACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGG
CCACAGGCACCGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAA
GGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCAC
GACATCAACCGCGAGCCCCTCATTATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCG
TGCTCTCAGGCAAGGATGTCAACGGCGAGTGTGGGAACTTCGTCAGGCTCATCCAGCCCTGGAA
CCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTATGTGAACCGT
GGACGCCGCGCCCAGGCCACACGATGGACCCAGACTCAGGCGGTCAGAGGCCGCGGCAGCAGAG
CCACGGATGGTGCCCTCCGCCCGACGCCCACAGCCCCACGCCAGGATTACATCTTCTACCTGGA
GCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCG
GCCCTCATCAATGAGGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCA
TCTTCCGCACACTTGGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAA
CGACCCGTCGTTCATCCATGCTGAGCTCATTCCTGACAGCGCGGAGCGCAATGATGATAAGCTT
TACTTCTTCTTCCGTGAGCGGTCGGCAGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCG
GGCGCATTTGCCTGAACGATGACGGTGGTCACTGTTGCCTGGTCAACAAGTGGAGCACATTCCT
GAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTCACTTTGATGAGCTC
CAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGTCTTTACCT
CCTCTGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATGGT
CTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAG
ATGCCCTACCCACGGCCGGGCACGTGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCA
AGGATTATCCTGATGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGGCCGTGTA
CCCTCTGCAGCGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCTACCGCCTCACCACTATTGCC
GTGGACCAGGTGGATGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGA
CAGTGCAGAAGGTCATTGTGCTGCCCAAGGATGACCAGGAGATGGAGGAGCTCATGCTGGAGGA
GGTGGAGGTCTTCAAGGATCCAGCACCCGTCAAGACCATGACCATCTCTTCTAAGAGGCAACAA
CTCTACGTGGCGTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCGTATGGGG
CTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTGTGCCTGGGATGGCCAGGCCTGCTC
CCGCTATACAGCATCCTCCAAGAGGCGGAGCCGCCGGCAGGACGTCCGGCACGGAAACCCCATC
AGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATGCCGTGGAGTCTGTGCAGTATGGCG
TGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAAGCCACTGTTAAGTGGCT
GTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACA
GAGCAGGGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCA
CTGAGAATAACTTTAAGCACGTCGTCACACGAGTGCAGCTGCATGTACTGGGCCGGGACGCCGT
CCATGCTGCCCTCTTCCCACCACTGTCCGTGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCA
ACGCCTCCTTACCAGGAGTTAGCCCAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGT
ACTGCCAGGGTTACTGGCGCCATGTGCCCCCCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTC
TCCTGAGCCCCAGGACCAGAAAAAGCCCCGGAACCGCCGGCACCACCCTCCGGACACATGAGGC
CAGCTGCCTGTGCCCTGCCATGGGCCAGCCTAGCCCTTGTCCCTTTTAATATAAAAGATATATA
TATATATATATATATATAAAATATCTATATTCTATACACACCCTGCCCCTGCAAAGACAGTATT
TATTGGTGGGTTGAATATAGCCTGCCTCAGTGGCAGCATCCTCCAAAACTTAGACCCATGCTGG
TCAGAGACGGCAGAAAACAGAGCCTGCCTAACCAGGCCCAGCCAGTTGGTGGGGCCAGGCCAGG
ACCACACAGTCCCCAGACTCAGCTGGAAGTCTACCTGCTCGACAGCCTCCGCCAAGATCTACAG
GACAAAGGGAGGGAGCAAGCCCTACTCGGATGGGGCATGGACTGTCCACCTTTTCTGATGTGTG
TTGTCAGCCTGTGCTGTGGCATAGACATGGATGCGAGGACCACTTTGGAGACTGGGGTGGCATC
AAGAGCACACAGAGAAGGGAAGAAGGGGCCATCACAGGATGCCAGCCCCTGCCTGGGTTGGGGG
CACTCAGCCACGACCAGCCCCTTCCTGGGTATTTATTCTCTATTTATTGGGGATAGGAGAAGAG
GCATCCTGCCTGGGTGGGACAGCCCCTTCAGCCCCTTCTCCCCTCCCCGCCTGGCCAGGGCAGG
GCCACCCCACTCTACCTCCTTAGCTTTCCCTGTGCCACTTTGACTCAGAGGCTGGGAGCATAGC
AGAGGGGCCAGGCCCAGGCAGGGCTGACGGGAGGCCCCAGCTCTGAGGGGAGGGGGTCCGTGGT
AGAGGCCTGGGGCTGGTAGAGTCTCCCCAGGGCTCCCTTATGTCCACCACTTCAAGCAATGGGT
GTGGATGTAATTAGCTCTGGGGGGCAGTTGGGTAGATGGGTGGGGGCTCCTGGTGGCCTTCTGC
TGCCCAGGCCACAGCCGCCTTTGGGTTCCATCTTGCTAATAAACACTGGCTCTGGGACTAGA

hide sequence

RefSeq Acc Id:

XM_008972234 ⟹ XP_008970482

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	50,138,284 - 50,171,978 (+)	NCBI
NHGRI_mPanPan1	3	50,143,073 - 50,176,753 (+)	NCBI
Mhudiblu_PPA_v0	3	50,083,837 - 50,117,518 (+)	NCBI
PanPan1.1	3	51,318,089 - 51,351,958 (+)	NCBI

Sequence:

show sequence

GGGGCCGCTAGCGCGGACCGGCCCAACGGGAGCCGCTCCGTGCCGCCGCCGCCGCCCGGGCGCC
CAGGCCCCGCCGCTGCGGAAGAGGTTTCTAGAGAGTGGAGCCTGCTTCCTGGGCCCTAGGCCCC
TCCCACAATGCTTGTCGCCGGTCTTCTCCTCTGGGCTTCCCTACTGACTGGGGCCTGGCCATCC
TTCCCCACCCAGGACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGG
CCACAGGCACCGCCCACTTCTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAA
GGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCAC
GACATCAACCGCGAGCCCCTCATTATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCG
TGCTCTCAGGCAAGGATGTCAACGGCGAGTGTGGGAACTTCGTCAGGCTCATCCAGCCCTGGAA
CCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTATGTGAACCGT
GGACGCCGCGCCCAGGATTACATCTTCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCA
AGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCATCAATGAGGAGCTCTATGCTGG
TGTGTACATCGATTTTATGGGCACTGATGCAGCCATCTTCCGCACACTTGGAAAGCAGACAGCC
ATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGCTCA
TTCCTGACAGCGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGTGAGCGGTCGGCAGA
GGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATGACGGTGGT
CACTGTTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGG
GCGAGGATGGCATTGAGACTCACTTTGATGAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGA
CGTGAGGAACCCTGTCATTTACGCTGTCTTTACCTCCTCTGGCTCCGTGTTCCGAGGCTCTGCC
GTGTGTGTCTACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGG
GGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCACGTGCCC
TGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGATTATCCTGATGAGGTGATCAACTTC
ATGCGCAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGGCCCCTGGTAGTCC
GCACAGGTGCTCCCTACCGCCTCACCACTATTGCCGTGGACCAGGTGGATGCAGCCGACGGGCG
CTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATTGTGCTGCCCAAG
GATGACCAGGAGATGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCTTCAAGGATCCAGCACCCG
TCAAGACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGGCGTCAGCCGTGGGTGTCAC
ACACCTGAGCCTGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGG
GACCCTTACTGTGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGA
GCCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGC
CAACAAGAATGCCGTGGAGTCTGTGCAGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGC
CAGCCCCGCTCGCCCCAAGCCACTGTTAAGTGGCTGTTCCAGCGAGATCCTGGTGACCGGCGCC
GAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACAGAGCAGGGCTTGTTGCTCCGTGCACTGCA
GCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGAATAACTTTAAGCACGTCGTCACA
CGAGTGCAGCTGCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCTCTTCCCACCACTGTCCG
TGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCAACGCCTCCTTACCAGGAGTTAGCCCAGCT
GCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGTTACTGGCGCCATGTGCCC
CCCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGAGCCCCAGGACCAGAAAAAGCCCC
GGAACCGCCGGCACCACCCTCCGGACACATGAGGCCAGCTGCCTGTGCCCTGCCATGGGCCAGC
CTAGCCCTTGTCCCTTTTAATATAAAAGATATATATATATATATATATATATAAAATATCTATA
TTCTATACACACCCTGCCCCTGCAAAGACAGTATTTATTGGTGGGTTGAATATAGCCTGCCTCA
GTGGCAGCATCCTCCAAAACTTAGACCCATGCTGGTCAGAGACGGCAGAAAACAGAGCCTGCCT
AACCAGGCCCAGCCAGTTGGTGGGGCCAGGCCAGGACCACACAGTCCCCAGACTCAGCTGGAAG
TCTACCTGCTCGACAGCCTCCGCCAAGATCTACAGGACAAAGGGAGGGAGCAAGCCCTACTCGG
ATGGGGCATGGACTGTCCACCTTTTCTGATGTGTGTTGTCAGCCTGTGCTGTGGCATAGACATG
GATGCGAGGACCACTTTGGAGACTGGGGTGGCATCAAGAGCACACAGAGAAGGGAAGAAGGGGC
CATCACAGGATGCCAGCCCCTGCCTGGGTTGGGGGCACTCAGCCACGACCAGCCCCTTCCTGGG
TATTTATTCTCTATTTATTGGGGATAGGAGAAGAGGCATCCTGCCTGGGTGGGACAGCCCCTTC
AGCCCCTTCTCCCCTCCCCGCCTGGCCAGGGCAGGGCCACCCCACTCTACCTCCTTAGCTTTCC
CTGTGCCACTTTGACTCAGAGGCTGGGAGCATAGCAGAGGGGCCAGGCCCAGGCAGGGCTGACG
GGAGGCCCCAGCTCTGAGGGGAGGGGGTCCGTGGTAGAGGCCTGGGGCTGGTAGAGTCTCCCCA
GGGCTCCCTTATGTCCACCACTTCAAGCAATGGGTGTGGATGTAATTAGCTCTGGGGGGCAGTT
GGGTAGATGGGTGGGGGCTCCTGGTGGCCTTCTGCTGCCCAGGCCACAGCCGCCTTTGGGTTCC
ATCTTGCTAATAAACACTGGCTCTGGGACTAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003818882	(Get FASTA)	NCBI Sequence Viewer
	XP_008970482	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000037542
	ENSPPAP00000037542.1
	ENSPPAP00000037547
	ENSPPAP00000037547.1
	ENSPPAP00000037559.1
	ENSPPAP00000037567.1

RefSeq Acc Id:	XP_003818882 ⟸ XM_003818834
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9CH72 (UniProtKB/TrEMBL), A0A2R9C6Z1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDE DHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRT HLYVCGTGAYNPMCTYVNRGRRAQATRWTQTQAVRGRGSRATDGALRPTPTAPRQDYIFYLEPE RLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDP SFIHAELIPDSAERNDDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKA RLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFN GPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPL QRRPLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEVE VFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSRY TASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATVKWLFQ RDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRDAVHA ALFPPLSVSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPE PQDQKKPRNRRHHPPDT hide sequence

RefSeq Acc Id:	XP_008970482 ⟸ XM_008972234
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CH76 (UniProtKB/TrEMBL), A0A2R9C6Z1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDE DHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRT HLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALINEELYAGVY IDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAP QSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVR NPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGG TFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYRLTTIAVDQVDAADGRYE VLFLGTDRGTVQKVIVLPKDDQEMEELMLEEVEVFKDPAPVKTMTISSKRQQLYVASAVGVTHL SLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANK NAVESVQYGVAGSAAFLECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLS DRGLYSCTATENNFKHVVTRVQLHVLGRDAVHAALFPPLSVSAPPPPGAGPPTPPYQELAQLLA QPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT hide sequence

RefSeq Acc Id:

ENSPPAP00000037547 ⟸ ENSPPAT00000060447

RefSeq Acc Id:

ENSPPAP00000037542 ⟸ ENSPPAT00000060442

RefSeq Acc Id:

ENSPPAP00000037559 ⟸ ENSPPAT00000060459

RefSeq Acc Id:

ENSPPAP00000037567 ⟸ ENSPPAT00000060467

Protein Domains

Ig-like Sema

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000041494	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000060442.1	UniProtKB/TrEMBL
	ENSPPAT00000060447.1	UniProtKB/TrEMBL
	ENSPPAT00000060459.1	UniProtKB/TrEMBL
	ENSPPAT00000060467.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Semap_dom	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100979715	UniProtKB/TrEMBL
NCBI Gene	SEMA3F	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-3F	UniProtKB/TrEMBL
Pfam	Sema	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	SEMA	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	SSF101912	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A2R9C6Z1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CH72	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CH76	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CH93_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD