SHKBP1 (SH3KBP1 binding protein 1) - Rat Genome Database

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Gene: SHKBP1 (SH3KBP1 binding protein 1) Pan paniscus
Analyze
Symbol: SHKBP1
Name: SH3KBP1 binding protein 1
RGD ID: 11925665
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (inferred); protein homooligomerization (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3KBP1-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,836,135 - 46,850,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,707,060 - 48,721,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,621,867 - 37,636,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,128,717 - 46,143,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,128,717 - 46,143,423 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SHKBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,836,135 - 46,850,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,707,060 - 48,721,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,621,867 - 37,636,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,128,717 - 46,143,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,128,717 - 46,143,423 (+)Ensemblpanpan1.1panPan2
SHKBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,576,873 - 40,591,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,576,853 - 40,591,399 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,082,779 - 41,097,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,774,630 - 45,789,141 (+)NCBINCBI36Build 36hg18NCBI36
Build 341945,774,629 - 45,789,141NCBI
Celera1937,881,810 - 37,896,356 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,517,305 - 37,531,390 (+)NCBIHuRef
CHM1_11941,082,689 - 41,097,190 (+)NCBICHM1_1
T2T-CHM13v2.01943,397,488 - 43,411,988 (+)NCBIT2T-CHM13v2.0
Shkbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,041,553 - 27,055,440 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,041,558 - 27,055,444 (-)EnsemblGRCm39 Ensembl
GRCm38727,342,128 - 27,356,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,342,133 - 27,356,019 (-)EnsemblGRCm38mm10GRCm38
MGSCv37728,127,152 - 28,141,027 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,050,897 - 27,064,779 (-)NCBIMGSCv36mm8
Celera721,921,926 - 21,935,907 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.88NCBI
Shkbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,764,426 - 91,777,959 (-)NCBIGRCr8
mRatBN7.2182,636,797 - 82,650,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,636,797 - 82,650,375 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,039,474 - 88,052,984 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,526,308 - 96,539,792 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,795,329 - 89,808,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,154,703 - 84,168,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,154,703 - 84,168,074 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,365,817 - 85,379,188 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,422,792 - 82,436,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,500,913 - 82,514,376 (-)NCBI
Celera177,048,385 - 77,061,819 (-)NCBICelera
Cytogenetic Map1q21NCBI
Shkbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578716,632 - 730,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578716,818 - 730,593 (-)NCBIChiLan1.0ChiLan1.0
SHKBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,154,285 - 113,165,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,154,460 - 113,165,992 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,556,527 - 112,568,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,752,860 - 113,764,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,752,862 - 113,764,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,312,464 - 113,324,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,944,344 - 112,956,029 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,938,677 - 113,950,366 (-)NCBIUU_Cfam_GSD_1.0
Shkbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,475,905 - 14,487,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,903,938 - 2,915,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,903,986 - 2,915,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHKBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,813,168 - 48,826,457 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,813,163 - 48,826,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SHKBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,036,834 - 35,050,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607313,160,024 - 13,173,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shkbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925529,182 - 542,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925529,333 - 542,230 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000065728   ⟹   ENSPPAP00000042796
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,128,717 - 46,143,423 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065730   ⟹   ENSPPAP00000042798
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,128,760 - 46,130,882 (+)Ensembl
RefSeq Acc Id: XM_003812481   ⟹   XP_003812529
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,836,135 - 46,850,721 (+)NCBI
NHGRI_mPanPan11948,707,060 - 48,721,631 (+)NCBI
Mhudiblu_PPA_v01937,621,867 - 37,636,431 (+)NCBI
PanPan1.11946,128,717 - 46,143,423 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055103172   ⟹   XP_054959147
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,836,135 - 46,850,721 (+)NCBI
NHGRI_mPanPan11948,707,060 - 48,721,631 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003812529 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959147 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042796
  ENSPPAP00000042796.1
  ENSPPAP00000042798.1
RefSeq Acc Id: XP_003812529   ⟸   XM_003812481
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CLG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000042796   ⟸   ENSPPAT00000065728
RefSeq Acc Id: ENSPPAP00000042798   ⟸   ENSPPAT00000065730
RefSeq Acc Id: XP_054959147   ⟸   XM_055103172
- Peptide Label: isoform X2
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043952 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065728.1 UniProtKB/TrEMBL
  ENSPPAT00000065730.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SHKBP1/KCTD3 UniProtKB/TrEMBL
  SHKBP1_KCTD3_BTB_POZ UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100988772 UniProtKB/TrEMBL
NCBI Gene SHKBP1 ENTREZGENE
PANTHER SETA BINDING PROTEIN 1 UniProtKB/TrEMBL
  SH3KBP1-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A2R9CLG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CNJ6_PANPA UniProtKB/TrEMBL