MAB21L4 (mab-21 like 4) - Rat Genome Database

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Gene: MAB21L4 (mab-21 like 4) Pan paniscus
Analyze
Symbol: MAB21L4
Name: mab-21 like 4
RGD ID: 11922054
Description: ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C2BH2orf54; chromosome 2B C2orf54 homolog; chromosome 2B open reading frame, human C2orf54; uncharacterized protein C2orf54 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,574,547 - 143,584,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,589,512 - 143,599,665 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,144,248 - 128,154,670 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,946,812 - 246,956,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,946,812 - 246,956,949 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
MAB21L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,574,547 - 143,584,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,589,512 - 143,599,665 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,144,248 - 128,154,670 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,946,812 - 246,956,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,946,812 - 246,956,949 (-)Ensemblpanpan1.1panPan2
MAB21L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,886,048 - 240,896,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,886,048 - 240,896,889 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,825,465 - 241,835,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,474,138 - 241,484,246 (-)NCBINCBI36Build 36hg18NCBI36
Celera2235,498,112 - 235,508,356 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,586,038 - 233,596,152 (-)NCBIHuRef
CHM1_12241,831,514 - 241,841,622 (-)NCBICHM1_1
T2T-CHM13v2.02241,385,221 - 241,396,155 (-)NCBIT2T-CHM13v2.0
Mab21l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,079,076 - 93,088,679 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,079,071 - 93,088,670 (-)EnsemblGRCm39 Ensembl
GRCm38193,151,354 - 93,160,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,151,349 - 93,160,948 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,047,932 - 95,057,525 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,981,762 - 94,991,354 (-)NCBIMGSCv36mm8
Celera196,096,009 - 96,105,603 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.03NCBI
Mab21l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,138,408 - 101,148,516 (-)NCBIGRCr8
mRatBN7.2993,690,455 - 93,701,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,690,999 - 93,700,506 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,126,555 - 102,136,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,262,484 - 107,271,990 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,618,634 - 105,628,140 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,296,780 - 100,307,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,296,781 - 100,306,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,954,885 - 99,965,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,427,931 - 92,437,438 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera991,226,354 - 91,235,861 (-)NCBICelera
Cytogenetic Map9q36NCBI
Mab21l4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542701,633 - 709,315 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542699,717 - 708,760 (+)NCBIChiLan1.0ChiLan1.0
MAB21L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,731,528 - 50,738,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,195,414 - 51,230,786 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,177,278 - 51,212,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,177,283 - 51,183,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,018,276 - 51,025,673 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,764,682 - 50,799,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,040,504 - 51,075,966 (-)NCBIUU_Cfam_GSD_1.0
Mab21l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,366,644 - 192,374,541 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745844,883 - 852,803 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745845,240 - 852,776 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAB21L4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115139,734,539 - 139,745,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,631,214 - 157,649,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAB21L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,952,353 - 126,964,319 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,949,416 - 126,962,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604072,426,311 - 72,435,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mab21l4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,078,945 - 5,087,436 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,079,755 - 5,087,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000058100   ⟹   ENSPPAP00000035212
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B246,946,812 - 246,956,949 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000058103   ⟹   ENSPPAP00000035215
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B246,946,812 - 246,952,803 (-)Ensembl
RefSeq Acc Id: XM_003813072   ⟹   XP_003813120
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213143,574,547 - 143,584,700 (-)NCBI
NHGRI_mPanPan12B143,589,512 - 143,599,665 (-)NCBI
Mhudiblu_PPA_v02B128,144,248 - 128,154,670 (-)NCBI
PanPan1.12B246,946,812 - 246,956,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055109449   ⟹   XP_054965424
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213143,574,547 - 143,580,535 (-)NCBI
NHGRI_mPanPan12B143,589,512 - 143,595,500 (-)NCBI
RefSeq Acc Id: XM_055109450   ⟹   XP_054965425
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213143,574,547 - 143,580,535 (-)NCBI
NHGRI_mPanPan12B143,589,512 - 143,595,500 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003813120 (Get FASTA)   NCBI Sequence Viewer  
  XP_054965424 (Get FASTA)   NCBI Sequence Viewer  
  XP_054965425 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000035212.1
  ENSPPAP00000035215.1
RefSeq Acc Id: XP_003813120   ⟸   XM_003813072
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BZX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000035212   ⟸   ENSPPAT00000058100
RefSeq Acc Id: ENSPPAP00000035215   ⟸   ENSPPAT00000058103
RefSeq Acc Id: XP_054965425   ⟸   XM_055109450
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054965424   ⟸   XM_055109449
- Peptide Label: isoform X2
Protein Domains
Mab-21-like HhH/H2TH-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040432 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058100.1 UniProtKB/TrEMBL
  ENSPPAT00000058103.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
InterPro Mab-21_dom UniProtKB/TrEMBL
  Mab-21_HhH/H2TH-like UniProtKB/TrEMBL
KEGG Report pps:100992494 UniProtKB/TrEMBL
NCBI Gene C2BH2orf54 ENTREZGENE
PANTHER CELL FATE DETERMINING PROTEIN MAB21-RELATED UniProtKB/TrEMBL
  PTHR10656:SF7 UniProtKB/TrEMBL
Pfam Mab-21_C UniProtKB/TrEMBL
SMART Mab-21 UniProtKB/TrEMBL
UniProt A0A2R9BZX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C327_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-10 MAB21L4  mab-21 like 4  C2BH2orf54  chromosome 2B C2orf54 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C2BH2orf54  chromosome 2B C2orf54 homolog    chromosome 2B open reading frame, human C2orf54  Symbol and/or name change 5135510 APPROVED