TAC4 (tachykinin precursor 4) - Rat Genome Database

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Gene: TAC4 (tachykinin precursor 4) Pan paniscus
Analyze
Symbol: TAC4
Name: tachykinin precursor 4
RGD ID: 11921317
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); signaling receptor binding (ortholog); substance K receptor binding (ortholog); INVOLVED IN detection of temperature stimulus involved in sensory perception of pain (ortholog); negative regulation of sensory perception of pain (ortholog); negative regulation of systemic arterial blood pressure (ortholog); ASSOCIATED WITH genetic disease (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tachykinin 4; tachykinin 4 (hemokinin); tachykinin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,028,835 - 66,035,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,835,645 - 70,841,439 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,931,170 - 43,936,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,655,003 - 48,664,586 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,655,003 - 48,664,586 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TAC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,028,835 - 66,035,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,835,645 - 70,841,439 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,931,170 - 43,936,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,655,003 - 48,664,586 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,655,003 - 48,664,586 (-)Ensemblpanpan1.1panPan2
TAC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,838,300 - 49,848,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,838,300 - 49,848,069 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,915,662 - 47,925,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,270,670 - 45,280,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,276,416 - 45,280,378NCBI
Celera1744,370,664 - 44,380,373 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,280,680 - 43,290,389 (-)NCBIHuRef
CHM1_11747,979,629 - 47,989,333 (-)NCBICHM1_1
T2T-CHM13v2.01750,701,401 - 50,711,169 (-)NCBIT2T-CHM13v2.0
Tac4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,152,355 - 95,160,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,152,355 - 95,160,091 (+)EnsemblGRCm39 Ensembl
GRCm381195,261,529 - 95,269,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,261,529 - 95,269,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,122,843 - 95,130,576 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,077,619 - 95,085,352 (+)NCBIMGSCv36mm8
Celera11104,876,160 - 104,883,938 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Tac4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,704,640 - 80,712,972 (+)NCBIGRCr8
mRatBN7.21080,207,824 - 80,216,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,207,610 - 80,216,156 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,155,936 - 85,164,269 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,653,995 - 84,662,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,046,770 - 80,055,108 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,081,168 - 83,089,487 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,081,168 - 83,089,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,891,623 - 82,899,780 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,946,235 - 83,954,475 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,960,604 - 83,968,845 (+)NCBI
Celera1078,980,366 - 78,988,648 (+)NCBICelera
Cytogenetic Map10q26NCBI
Tac4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545111,755,645 - 11,763,281 (+)NCBIChiLan1.0ChiLan1.0
TAC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,886,197 - 25,890,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,882,360 - 25,889,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,344,049 - 25,347,995 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,680,906 - 26,684,852 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1925,448,766 - 25,452,712 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,707,949 - 25,711,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,837,319 - 25,841,265 (-)NCBIUU_Cfam_GSD_1.0
Tac4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,307,446 - 25,317,252 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649011,762,989 - 11,767,693 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,015,180 - 26,024,661 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,015,176 - 26,024,744 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,019,463 - 26,029,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,489,184 - 43,500,908 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,490,160 - 43,499,820 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607714,206,234 - 14,215,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tac4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247955,898,851 - 5,905,781 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063599247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000033085   ⟹   ENSPPAP00000010435
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1748,655,003 - 48,664,586 (-)Ensembl
RefSeq Acc Id: XM_063599247   ⟹   XP_063455317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21966,028,835 - 66,035,424 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063455317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000010435.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000010435   ⟸   ENSPPAT00000033085
RefSeq Acc Id: XP_063455317   ⟸   XM_063599247


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028441 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033085.1 UniProtKB/TrEMBL
InterPro Tachy_Neuro_lke_CS UniProtKB/TrEMBL
NCBI Gene TAC4 ENTREZGENE
PANTHER TACHYKININ UniProtKB/TrEMBL
  TACHYKININ-4 UniProtKB/TrEMBL
PROSITE TACHYKININ UniProtKB/TrEMBL
UniProt A0A2R9A569_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 TAC4  tachykinin precursor 4  TAC4  tachykinin 4  Symbol and/or name change 5135510 APPROVED
2018-01-09 TAC4  tachykinin 4    tachykinin 4 (hemokinin)  Symbol and/or name change 5135510 APPROVED