SLC22A18 (solute carrier family 22 member 18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC22A18 (solute carrier family 22 member 18) Pan paniscus
Analyze
Symbol: SLC22A18
Name: solute carrier family 22 member 18
RGD ID: 11909680
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN transmembrane transport (inferred); xenobiotic detoxification by transmembrane export across the plasma membrane (inferred); xenobiotic transport (inferred); ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,313,280 - 5,337,023 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,525,329 - 4,549,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,927,586 - 2,950,801 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,956,086 - 2,978,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,956,086 - 2,978,958 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC22A18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,313,280 - 5,337,023 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,525,329 - 4,549,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,927,586 - 2,950,801 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,956,086 - 2,978,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,956,086 - 2,978,958 (+)Ensemblpanpan1.1panPan2
SLC22A18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,899,691 - 2,925,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,899,721 - 2,925,246 (+)EnsemblGRCh38hg38GRCh38
GRCh37112,920,921 - 2,946,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,877,527 - 2,903,052 (+)NCBINCBI36Build 36hg18NCBI36
Build 34112,877,526 - 2,903,051NCBI
Celera112,955,665 - 2,981,127 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef112,709,509 - 2,734,907 (+)NCBIHuRef
CHM1_1112,919,878 - 2,945,340 (+)NCBICHM1_1
T2T-CHM13v2.0112,988,937 - 3,014,343 (+)NCBIT2T-CHM13v2.0
Slc22a18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,027,502 - 143,053,071 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,027,473 - 143,053,071 (+)EnsemblGRCm39 Ensembl
GRCm387143,473,726 - 143,499,334 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,473,736 - 143,499,334 (+)EnsemblGRCm38mm10GRCm38
MGSCv377150,659,660 - 150,685,239 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,283,179 - 143,308,712 (+)NCBIMGSCv36mm8
Celera7143,229,457 - 143,255,022 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.22NCBI
Slc22a18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,100,032 - 208,124,382 (+)NCBIGRCr8
mRatBN7.21198,670,626 - 198,694,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,671,731 - 198,694,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,050,444 - 207,073,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,136,965 - 214,160,153 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,811,106 - 206,834,292 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,676,330 - 216,700,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,677,373 - 216,700,641 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,536,611 - 223,560,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,852,313 - 203,876,165 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11204,005,765 - 204,029,618 (+)NCBI
Celera1196,240,012 - 196,263,286 (+)NCBICelera
Cytogenetic Map1q42NCBI
Slc22a18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,592,250 - 14,616,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,590,588 - 14,615,898 (+)NCBIChiLan1.0ChiLan1.0
SLC22A18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,878,096 - 46,898,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,878,030 - 46,898,006 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,484,952 - 45,507,634 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,555,151 - 47,577,838 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,555,391 - 47,577,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11847,000,436 - 47,023,137 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,583,140 - 46,605,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,329,683 - 47,352,384 (+)NCBIUU_Cfam_GSD_1.0
Slc22a18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049473,098,035 - 3,118,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367941,042,224 - 1,061,345 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367941,042,103 - 1,061,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,028,396 - 2,055,750 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,032,370 - 2,055,756 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22607,303 - 612,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,712,792 - 2,737,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,715,027 - 2,737,872 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,913,572 - 99,938,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,653,047 - 15,677,640 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,653,083 - 15,677,691 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000038993   ⟹   ENSPPAP00000016299
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl112,956,086 - 2,978,958 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039002   ⟹   ENSPPAP00000016307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl112,957,238 - 2,978,909 (+)Ensembl
RefSeq Acc Id: XM_003816047   ⟹   XP_003816095
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,313,280 - 5,336,171 (+)NCBI
NHGRI_mPanPan1114,525,334 - 4,548,125 (+)NCBI
Mhudiblu_PPA_v0112,927,586 - 2,950,397 (+)NCBI
PanPan1.1112,956,086 - 2,978,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024930964   ⟹   XP_024786732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,313,699 - 5,336,171 (+)NCBI
NHGRI_mPanPan1114,525,570 - 4,548,126 (+)NCBI
Mhudiblu_PPA_v0112,927,802 - 2,950,397 (+)NCBI
PanPan1.1112,956,482 - 2,978,958 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034931958   ⟹   XP_034787849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,313,286 - 5,337,022 (+)NCBI
NHGRI_mPanPan1114,525,329 - 4,549,191 (+)NCBI
Mhudiblu_PPA_v0112,927,586 - 2,950,801 (+)NCBI
RefSeq Acc Id: XM_063608052   ⟹   XP_063464122
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,313,286 - 5,337,023 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003816095 (Get FASTA)   NCBI Sequence Viewer  
  XP_024786732 (Get FASTA)   NCBI Sequence Viewer  
  XP_034787849 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016299.1
  ENSPPAP00000016307.1
RefSeq Acc Id: XP_003816095   ⟸   XM_003816047
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024786732   ⟸   XM_024930964
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034787849   ⟸   XM_034931958
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000016307   ⟸   ENSPPAT00000039002
RefSeq Acc Id: ENSPPAP00000016299   ⟸   ENSPPAT00000038993
RefSeq Acc Id: XP_063464122   ⟸   XM_063608052
- Peptide Label: isoform X1

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031256 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038993.1 UniProtKB/TrEMBL
  ENSPPAT00000039002.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Tet-R_TetA/multi-R_MdtG UniProtKB/TrEMBL
KEGG Report pps:100991610 UniProtKB/TrEMBL
NCBI Gene SLC22A18 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 18 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 18 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PRINTS TCRTETA UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A2R9AG43_PANPA UniProtKB/TrEMBL
  A0A2R9AMW0_PANPA UniProtKB/TrEMBL