LOC100980742 (putative uncharacterized protein encoded by LINC01599) - Rat Genome Database

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Gene: LOC100980742 (putative uncharacterized protein encoded by LINC01599) Pan paniscus
Analyze
Symbol: LOC100980742
Name: putative uncharacterized protein encoded by LINC01599
RGD ID: 11908509
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); L-2-hydroxyglutaric aciduria (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LINC01599; long intergenic non-protein coding RNA 1599; putative uncharacterized protein C14orf183-like
RGD Orthologs
Human
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21551,217,726 - 51,235,381 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11450,434,230 - 50,449,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,671,031 - 30,680,109 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,976,894 - 48,986,232 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LOC100980742
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21551,217,726 - 51,235,381 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11450,434,230 - 50,449,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,671,031 - 30,680,109 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,976,894 - 48,986,232 (-)NCBIpanpan1.1PanPan1.1panPan2
LINC01599
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,007,313 - 50,105,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,927,571 - 50,105,102 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,474,031 - 50,571,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,620,119 - 49,629,111 (-)NCBINCBI36Build 36hg18NCBI36
Celera1430,417,514 - 30,426,499 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,675,796 - 30,684,781 (-)NCBIHuRef
CHM1_11450,489,049 - 50,498,037 (-)NCBICHM1_1
T2T-CHM13v2.01444,212,500 - 44,311,279 (-)NCBIT2T-CHM13v2.0
LOC103229896
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12427,145,235 - 27,156,062 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605315,477,939 - 15,488,343 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003831737   ⟹   XP_003831785
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21551,217,726 - 51,235,381 (-)NCBI
NHGRI_mPanPan11450,434,230 - 50,449,397 (-)NCBI
Mhudiblu_PPA_v01430,671,031 - 30,680,109 (-)NCBI
PanPan1.11448,976,894 - 48,986,232 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021789.1
Reference Protein Sequences
RefSeq Acc Id: XP_003831785   ⟸   XM_003831737
- UniProtKB: A0A2R9AX43 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034084 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044592.1 UniProtKB/TrEMBL
KEGG Report pps:100980742 UniProtKB/TrEMBL
NCBI Gene LINC01599 ENTREZGENE
UniProt A0A2R9AX43 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LOC100980742  putative uncharacterized protein encoded by LINC01599  LINC01599  long intergenic non-protein coding RNA 1599  Symbol and/or name change 5135510 APPROVED