ATF3 (activating transcription factor 3) - Rat Genome Database

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Gene: ATF3 (activating transcription factor 3) Pan paniscus
Analyze
Symbol: ATF3
Name: activating transcription factor 3
RGD ID: 11898870
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN gluconeogenesis (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); cardiomyopathy (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclic AMP-dependent transcription factor ATF-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,782,154 - 36,794,324 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,746,605 - 36,759,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,176,728 - 188,188,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,036,704 - 193,049,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,036,793 - 193,049,150 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,782,154 - 36,794,324 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,746,605 - 36,759,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,176,728 - 188,188,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,036,704 - 193,049,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,036,793 - 193,049,150 (+)Ensemblpanpan1.1panPan2
ATF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,565,407 - 212,620,777 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,565,334 - 212,620,777 (+)EnsemblGRCh38hg38GRCh38
GRCh371212,738,749 - 212,794,119 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,805,320 - 210,860,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 341209,170,507 - 209,182,494NCBI
Celera1185,964,759 - 186,020,178 (+)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,415,472 - 183,470,943 (+)NCBIHuRef
CHM1_11214,011,558 - 214,066,986 (+)NCBICHM1_1
T2T-CHM13v2.01211,810,345 - 211,865,712 (+)NCBIT2T-CHM13v2.0
Atf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,902,493 - 190,915,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,902,493 - 190,950,236 (-)EnsemblGRCm39 Ensembl
GRCm381191,170,296 - 191,183,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,170,296 - 191,218,039 (-)EnsemblGRCm38mm10GRCm38
MGSCv371192,994,175 - 193,007,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,870,911 - 192,883,948 (-)NCBIMGSCv36mm8
Celera1198,095,832 - 198,108,890 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Atf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,274,103 - 105,331,653 (-)NCBIGRCr8
mRatBN7.213102,751,278 - 102,800,520 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,751,321 - 102,764,631 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13105,271,388 - 105,284,695 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,655,344 - 106,668,650 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,870,330 - 103,883,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,817,892 - 109,849,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,817,728 - 109,849,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,411,692 - 114,443,432 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,191,622 - 107,223,850 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113107,380,725 - 107,412,954 (-)NCBI
Celera13102,216,359 - 102,219,172 (-)NCBICelera
RH 3.4 Map13723.4RGD
Cytogenetic Map13q27NCBI
Atf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554064,875,613 - 4,889,242 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554064,875,672 - 4,889,173 (-)NCBIChiLan1.0ChiLan1.0
ATF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,784,445 - 10,795,285 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,782,064 - 10,794,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,359,482 - 10,370,301 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,490,061 - 10,500,881 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,486,862 - 10,500,881 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,412,838 - 10,423,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,514,041 - 10,524,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,637,865 - 10,648,720 (+)NCBIUU_Cfam_GSD_1.0
Atf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,669,870 - 63,682,329 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557908,318 - 922,624 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557909,302 - 922,619 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,772,262 - 130,785,506 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,772,259 - 130,829,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,690,544 - 143,703,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,910,312 - 16,922,598 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605517,407,083 - 17,419,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477118,050,039 - 18,060,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477118,009,111 - 18,060,796 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000036154   ⟹   ENSPPAP00000013482
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1193,036,793 - 193,049,150 (+)Ensembl
RefSeq Acc Id: XM_003814177   ⟹   XP_003814225
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2136,782,154 - 36,794,324 (-)NCBI
NHGRI_mPanPan1136,746,605 - 36,759,088 (-)NCBI
Mhudiblu_PPA_v01188,176,762 - 188,188,842 (+)NCBI
PanPan1.11193,036,704 - 193,049,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008966799   ⟹   XP_008965047
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2136,782,154 - 36,794,253 (-)NCBI
NHGRI_mPanPan1136,746,605 - 36,759,016 (-)NCBI
Mhudiblu_PPA_v01188,177,043 - 188,188,842 (+)NCBI
PanPan1.11193,036,804 - 193,049,148 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003814225 (Get FASTA)   NCBI Sequence Viewer  
  XP_008965047 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013482
  ENSPPAP00000013482.1
RefSeq Acc Id: XP_003814225   ⟸   XM_003814177
- UniProtKB: A0A2R9ADB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008965047   ⟸   XM_008966799
- UniProtKB: A0A2R9ADB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000013482   ⟸   ENSPPAT00000036154
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029919 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036154.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro AP-1 UniProtKB/TrEMBL
  bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
KEGG Report pps:100971096 UniProtKB/TrEMBL
NCBI Gene ATF3 ENTREZGENE
PANTHER PTHR23351 UniProtKB/TrEMBL
  PTHR23351:SF23 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PRINTS LEUZIPPRFOS UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A2R9ADB1 ENTREZGENE, UniProtKB/TrEMBL