RUFY3 (RUN and FYVE domain containing 3) - Rat Genome Database

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Gene: RUFY3 (RUN and FYVE domain containing 3) Pan paniscus
Analyze
Symbol: RUFY3
Name: RUN and FYVE domain containing 3
RGD ID: 11897398
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN actin filament organization (ortholog); negative regulation of axonogenesis (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog); FOUND IN filopodium (ortholog); growth cone (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,276,447 - 59,377,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1459,471,389 - 59,572,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,415,742 - 53,516,600 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1459,762,339 - 59,846,574 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl459,762,053 - 59,846,574 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RUFY3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,276,447 - 59,377,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1459,471,389 - 59,572,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,415,742 - 53,516,600 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1459,762,339 - 59,846,574 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl459,762,053 - 59,846,574 (-)Ensemblpanpan1.1panPan2
RUFY3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,703,767 - 70,808,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,704,204 - 70,808,619 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,570,456 - 71,674,336 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36471,806,560 - 71,891,789 (+)NCBINCBI36Build 36hg18NCBI36
Celera468,927,653 - 69,031,337 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef467,374,309 - 67,478,077 (+)NCBIHuRef
CHM1_1471,606,608 - 71,710,363 (+)NCBICHM1_1
T2T-CHM13v2.0474,046,233 - 74,151,087 (+)NCBIT2T-CHM13v2.0
Rufy3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,711,305 - 88,799,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,712,899 - 88,799,251 (+)EnsemblGRCm39 Ensembl
GRCm38588,564,505 - 88,651,417 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,565,040 - 88,651,392 (+)EnsemblGRCm38mm10GRCm38
MGSCv37589,012,599 - 89,071,721 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,658,135 - 89,717,257 (+)NCBIMGSCv36mm8
Celera586,733,200 - 86,791,895 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.77NCBI
Rufy3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,715,593 - 19,790,530 (-)NCBIGRCr8
mRatBN7.21419,431,530 - 19,506,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,432,524 - 19,507,004 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1419,420,898 - 19,495,871 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,739,762 - 20,814,733 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01419,442,194 - 19,517,510 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,058,575 - 21,144,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,058,595 - 21,128,505 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01420,968,402 - 21,040,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,022,765 - 21,070,152 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1418,782,702 - 18,829,205 (-)NCBICelera
Cytogenetic Map14p22NCBI
Rufy3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554472,211,262 - 2,266,008 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554472,200,788 - 2,266,008 (-)NCBIChiLan1.0ChiLan1.0
RUFY3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11360,007,041 - 60,079,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1360,007,056 - 60,078,617 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,741,413 - 59,813,528 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01360,813,185 - 60,885,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1360,812,369 - 60,885,059 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,427,868 - 60,499,800 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01359,919,548 - 59,991,670 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01361,067,046 - 61,138,949 (+)NCBIUU_Cfam_GSD_1.0
Rufy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,535,254 - 15,594,049 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365983,987,320 - 4,046,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365983,987,287 - 4,046,019 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RUFY3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,495,033 - 67,582,142 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,494,552 - 67,582,144 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,403,191 - 71,490,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RUFY3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1719,214,051 - 19,316,840 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl719,232,434 - 19,300,550 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660843,562,094 - 3,671,841 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rufy3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248902,032,995 - 2,134,648 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248902,032,980 - 2,135,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003808985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003808986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008961145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008961147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008961148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024928718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034958689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055111455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000045389   ⟹   ENSPPAP00000022578
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl459,762,053 - 59,846,569 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045415   ⟹   ENSPPAP00000022604
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl459,762,339 - 59,846,574 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045424   ⟹   ENSPPAP00000022613
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl459,777,569 - 59,846,574 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045442   ⟹   ENSPPAP00000022631
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl459,779,831 - 59,845,846 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045447   ⟹   ENSPPAP00000022636
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl459,779,831 - 59,845,846 (-)Ensembl
RefSeq Acc Id: XM_003808985   ⟹   XP_003809033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,555,106 (-)NCBI
Mhudiblu_PPA_v0453,415,838 - 53,499,332 (-)NCBI
PanPan1.1459,762,339 - 59,846,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008961145   ⟹   XP_008959393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,555,055 (-)NCBI
Mhudiblu_PPA_v0453,417,693 - 53,499,408 (-)NCBI
PanPan1.1459,762,339 - 59,846,569 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008961147   ⟹   XP_008959395
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,291,388 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,486,414 - 59,555,041 (-)NCBI
Mhudiblu_PPA_v0453,430,767 - 53,499,332 (-)NCBI
PanPan1.1459,777,569 - 59,846,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008961148   ⟹   XP_008959396
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,291,388 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,486,414 - 59,555,106 (-)NCBI
Mhudiblu_PPA_v0453,430,767 - 53,499,332 (-)NCBI
PanPan1.1459,777,569 - 59,846,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034958684   ⟹   XP_034814575
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,377,256 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,572,246 (-)NCBI
Mhudiblu_PPA_v0453,415,742 - 53,516,600 (-)NCBI
RefSeq Acc Id: XM_055111449   ⟹   XP_054967424
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,377,232 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,572,248 (-)NCBI
RefSeq Acc Id: XM_055111450   ⟹   XP_054967425
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,377,232 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,572,247 (-)NCBI
RefSeq Acc Id: XM_055111451   ⟹   XP_054967426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,377,232 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,572,246 (-)NCBI
RefSeq Acc Id: XM_055111452   ⟹   XP_054967427
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,284,816 - 59,377,230 (-)NCBI
NHGRI_mPanPan1459,483,266 - 59,572,243 (-)NCBI
RefSeq Acc Id: XM_055111453   ⟹   XP_054967428
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,555,106 (-)NCBI
RefSeq Acc Id: XM_055111454   ⟹   XP_054967429
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,276,447 - 59,361,410 (-)NCBI
NHGRI_mPanPan1459,471,389 - 59,555,106 (-)NCBI
RefSeq Acc Id: XM_055111455   ⟹   XP_054967430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,291,388 - 59,377,226 (-)NCBI
NHGRI_mPanPan1459,488,427 - 59,572,231 (-)NCBI
RefSeq Acc Id: XM_063603793   ⟹   XP_063459863
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,280,544 - 59,377,230 (-)NCBI
RefSeq Acc Id: XR_010111968
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2359,284,816 - 59,377,230 (-)NCBI
RefSeq Acc Id: XP_003809033   ⟸   XM_003808985
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008959393   ⟸   XM_008961145
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008959396   ⟸   XM_008961148
- Peptide Label: isoform X13
- UniProtKB: A0A2R9B5J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008959395   ⟸   XM_008961147
- Peptide Label: isoform X12
- UniProtKB: A0A2R9B0H5 (UniProtKB/TrEMBL),   A0A2R9B5J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034814575   ⟸   XM_034958684
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000022578   ⟸   ENSPPAT00000045389
RefSeq Acc Id: ENSPPAP00000022604   ⟸   ENSPPAT00000045415
RefSeq Acc Id: ENSPPAP00000022613   ⟸   ENSPPAT00000045424
RefSeq Acc Id: ENSPPAP00000022636   ⟸   ENSPPAT00000045447
RefSeq Acc Id: ENSPPAP00000022631   ⟸   ENSPPAT00000045442
RefSeq Acc Id: XP_054967424   ⟸   XM_055111449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054967425   ⟸   XM_055111450
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054967426   ⟸   XM_055111451
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054967429   ⟸   XM_055111454
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054967428   ⟸   XM_055111453
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054967427   ⟸   XM_055111452
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054967430   ⟸   XM_055111455
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063459863   ⟸   XM_063603793
- Peptide Label: isoform X8
Protein Domains
RUN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045389.1 UniProtKB/TrEMBL
  ENSPPAT00000045415.1 UniProtKB/TrEMBL
  ENSPPAT00000045424.1 UniProtKB/TrEMBL
  ENSPPAT00000045442.1 UniProtKB/TrEMBL
  ENSPPAT00000045447.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.58.900 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro RUFY1-3 UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_RUFY3 UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100991426 UniProtKB/TrEMBL
NCBI Gene RUFY3 ENTREZGENE
PANTHER PROTEIN RUFY3 UniProtKB/TrEMBL
  RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam RUN UniProtKB/TrEMBL
PROSITE RUN UniProtKB/TrEMBL
SMART FYVE UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9AZ69_PANPA UniProtKB/TrEMBL
  A0A2R9B0D6_PANPA UniProtKB/TrEMBL
  A0A2R9B0H5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B5J3_PANPA UniProtKB/TrEMBL
  A0A2R9B5J8 ENTREZGENE, UniProtKB/TrEMBL