METTL23 (methyltransferase 23, arginine)

Gene: METTL23 (methyltransferase 23, arginine) Pan paniscus

Analyze

Symbol:

METTL23

Name:

methyltransferase 23, arginine

RGD ID:

11889950

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (inferred); heat shock protein binding (inferred); histone H3R17 methyltransferase activity (inferred); INVOLVED IN epigenetic programing of male pronucleus (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 44 (ortholog); genetic disease (ortholog); glaucoma (ortholog); FOUND IN male pronucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

histone-arginine methyltransferase METTL23; methyltransferase like 23; methyltransferase-like protein 23

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,776,578 - 92,782,425 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,602,363 - 97,608,139 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,803,797 - 70,809,702 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,370,157 - 76,375,727 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,370,184 - 76,375,727 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 44 (ISO)

genetic disease (ISO)

glaucoma (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cognition (IEA)

epigenetic programing of male pronucleus (IEA,ISO)

epigenetic programming in the zygotic pronuclei (IEA)

methylation (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytoplasm (IEA)

female pronucleus (IEA)

male pronucleus (IEA,ISO)

nucleus (IEA)

protein-containing complex (IEA)

Molecular Function

DNA-binding transcription factor binding (IEA)

heat shock protein binding (IEA)

histone H3R17 methyltransferase activity (IEA)

methyltransferase activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

METTL23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,776,578 - 92,782,425 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,602,363 - 97,608,139 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,803,797 - 70,809,702 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,370,157 - 76,375,727 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,370,184 - 76,375,727 (+)	Ensembl	panpan1.1		panPan2

METTL23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	76,726,041 - 76,733,881 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	76,726,830 - 76,733,936 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	74,722,123 - 74,729,963 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	72,234,545 - 72,241,557 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	71,315,319 - 71,322,335 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	70,150,623 - 70,157,677 (+)	NCBI		HuRef
CHM1_1	17	74,787,720 - 74,794,774 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,623,024 - 77,630,868 (+)	NCBI		T2T-CHM13v2.0

Mettl23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,734,341 - 116,740,566 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,734,104 - 116,745,089 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,843,515 - 116,849,740 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,843,278 - 116,854,263 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	116,704,829 - 116,711,054 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,659,690 - 116,665,824 (+)	NCBI		MGSCv36	mm8
Celera	11	128,583,996 - 128,590,229 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.49	NCBI

Mettl23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,546,102 - 102,550,782 (+)	NCBI		GRCr8
mRatBN7.2	10	102,047,090 - 102,053,379 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	102,047,314 - 102,051,977 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	107,151,290 - 107,155,954 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,614,379 - 106,619,043 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,968,145 - 101,972,809 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	105,787,935 - 105,793,307 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	105,787,935 - 105,792,598 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	105,446,488 - 105,451,857 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	106,948,784 - 106,953,448 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	106,963,290 - 106,967,951 (+)	NCBI
Celera	10	100,615,774 - 100,620,438 (+)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

Mettl23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955506	5,572,380 - 5,577,676 (-)	NCBI	ChiLan1.0	ChiLan1.0

METTL23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,031,941 - 4,037,012 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,031,955 - 4,037,127 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	4,712,547 - 4,718,514 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,706,888 - 4,712,854 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	4,707,775 - 4,712,855 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	4,732,757 - 4,738,721 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	4,852,396 - 4,858,363 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	4,933,446 - 4,939,415 (-)	NCBI		UU_Cfam_GSD_1.0

Mettl23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	4,636,758 - 4,640,607 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	1,773,719 - 1,774,995 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	1,771,141 - 1,775,593 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

METTL23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	4,804,037 - 4,808,913 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	4,802,404 - 4,808,948 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,655,404 - 4,660,799 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

METTL23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	44,948,737 - 44,955,587 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	44,946,066 - 44,955,606 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	15,686,697 - 15,693,751 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mettl23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	6,571,378 - 6,575,022 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008971581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014342238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034942953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034942954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034942955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057300228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000032789 ⟹ ENSPPAP00000010142

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	76,370,184 - 76,375,727 (+)	Ensembl

RefSeq Acc Id:

XM_008971581 ⟹ XP_008969829

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,776,640 - 92,782,425 (+)	NCBI
NHGRI_mPanPan1	17	97,602,363 - 97,608,139 (+)	NCBI
Mhudiblu_PPA_v0	17	70,803,925 - 70,809,702 (+)	NCBI
PanPan1.1	17	76,370,157 - 76,375,727 (+)	NCBI

Sequence:

show sequence

GCCGCTGTGCCCATCACTTCCGGTCGCGCCAGCCGCCCGTTGCCAGTTCTGCGCGTGTCCTGCA
TCTCCAGTATGGAATGTATGTTTGGCCCTGTGCTGTGGTCCTGGCCCAGTACCTTTGGTTTCAC
AGAAGATCTCTGCCAGGCAAGGCCATCTTAGAGATTGGAGCTGGAGTGAGCCTTCCAGGAATTT
TGGCTGCCAAATGTGGTGCACAAGTAATACTGTCAGACAGCTCAGAACTGCCTCACTGTCTGGA
AGTCTGTCGGCAAAGCTGCCAAATGAATAACCTGCCACATCTGCAGGTGGTAGGACTAACATGG
GGTCATGTATCTTGGGATCTTCTGGCTCTACCACCACAAGATATTATCCTTGCATCTGATGTGT
TCTTTGAACCAGAAGATTTTGAAGACATTTTGGCTACAATATATTTTTTGATGCACAAGAACCC
CAAGGTCCAATTGTGGTCTACTTATCAAGTTAGGAGTGCTGACTGGTCACTTGAAGCTTTACTC
TACAAATGGGATATGAAATGTGTCCACATTCCTCTTGAGTCTTTTGATGCAGACAAAGAAGATA
TAGCAGAATCTACCCTTCCAGGAAGACATACAGTTGAAATGCTGGTCATTTCCTTTGCAAAGGA
CAGTCTCTGAATTATACCTACAACCTGTTCTGGGACAGTGTCAATACTGATGAGCAACCTGGCA
CACAACTATGAGCAGACCACTTCAGCTTGAGAATGCAGTGGGTCTGAAGATGGTCAAGTCTGTT
TGCCTTAGATTTTGGTGTCACCTAGACAACACTTAAAGTCATATGAAACAAAAATTAAAATACG
TATTACAAGTA

hide sequence

RefSeq Acc Id:

XM_014342238 ⟹ XP_014197724

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,779,618 - 92,782,425 (+)	NCBI
NHGRI_mPanPan1	17	97,605,331 - 97,608,139 (+)	NCBI
Mhudiblu_PPA_v0	17	70,806,893 - 70,809,702 (+)	NCBI
PanPan1.1	17	76,373,044 - 76,375,727 (+)	NCBI

Sequence:

show sequence

ATGGAATGTATGTTTGGCCCTGTGCTGTGGTCCTGGCCCAGTACCTTTGGTTTCACAGAAGATC
TCTGCCAGATTGGAGCTGGAGTGAGCCTTCCAGGAATTTTGGCTGCCAAATGTGGTGCACAAGT
AATACTGTCAGACAGCTCAGAACTGCCTCACTGTCTGGAAGTCTGTCGGCAAAGCTGCCAAATG
AATAACCTGCCACATCTGCAGGTGGTAGGACTAACATGGGGTCATGTATCTTGGGATCTTCTGG
CTCTACCACCACAAGATATTATCCTTGCATCTGATGTGTTCTTTGAACCAGAAGATTTTGAAGA
CATTTTGGCTACAATATATTTTTTGATGCACAAGAACCCCAAGGTCCAATTGTGGTCTACTTAT
CAAGTTAGGAGTGCTGACTGGTCACTTGAAGCTTTACTCTACAAATGGGATATGAAATGTGTCC
ACATTCCTCTTGAGTCTTTTGATGCAGACAAAGAAGATATAGCAGAATCTACCCTTCCAGGAAG
ACATACAGTTGAAATGCTGGTCATTTCCTTTGCAAAGGACAGTCTCTGAATTATACCTACAACC
TGTTCTGGGACAGTGTCAATACTGATGAGCAACCTGGCACACAACTATGAGCAGACCACTTCAG
CTTGAGAATGCAGTGGGTCTGAAGATGGTCAAGTCTGTTTGCCTTAGATTTTGGTGTCACCTAG
ACAACACTTAAAGTCATATGAAACAAAAATTAAAATACGTATTACAAGTA

hide sequence

RefSeq Acc Id:

XM_057300228 ⟹ XP_057156211

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,776,593 - 92,782,425 (+)	NCBI
NHGRI_mPanPan1	17	97,602,376 - 97,608,139 (+)	NCBI

RefSeq Acc Id:

XM_063599427 ⟹ XP_063455497

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,776,578 - 92,782,425 (+)	NCBI

RefSeq Acc Id:

XM_063599428 ⟹ XP_063455498

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,776,675 - 92,782,425 (+)	NCBI

RefSeq Acc Id:

XM_063599429 ⟹ XP_063455499

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,776,804 - 92,782,425 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008969829	(Get FASTA)	NCBI Sequence Viewer
	XP_014197724	(Get FASTA)	NCBI Sequence Viewer
	XP_057156211	(Get FASTA)	NCBI Sequence Viewer
	XP_063455497	(Get FASTA)	NCBI Sequence Viewer
	XP_063455498	(Get FASTA)	NCBI Sequence Viewer
	XP_063455499	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000010142.1

RefSeq Acc Id:	XP_008969829 ⟸ XM_008971581
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZYU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAQVILSDSSELPHCLEVCRQ SCQMNNLPHLQVVGLTWGHVSWDLLALPPQDIILASDVFFEPEDFEDILATIYFLMHKNPKVQL WSTYQVRSADWSLEALLYKWDMKCVHIPLESFDADKEDIAESTLPGRHTVEMLVISFAKDSL hide sequence

RefSeq Acc Id:	XP_014197724 ⟸ XM_014342238
- Peptide Label:	isoform X5
- Sequence:	show sequence MECMFGPVLWSWPSTFGFTEDLCQIGAGVSLPGILAAKCGAQVILSDSSELPHCLEVCRQSCQM NNLPHLQVVGLTWGHVSWDLLALPPQDIILASDVFFEPEDFEDILATIYFLMHKNPKVQLWSTY QVRSADWSLEALLYKWDMKCVHIPLESFDADKEDIAESTLPGRHTVEMLVISFAKDSL hide sequence

RefSeq Acc Id:

ENSPPAP00000010142 ⟸ ENSPPAT00000032789

RefSeq Acc Id:	XP_057156211 ⟸ XM_057300228
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063455497 ⟸ XM_063599427
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063455498 ⟸ XM_063599428
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063455499 ⟸ XM_063599429
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZYU7 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028295	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000032789.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.150	UniProtKB/TrEMBL
InterPro	Methyltransf_16	UniProtKB/TrEMBL
	SAM-dependent_MTases	UniProtKB/TrEMBL
KEGG Report	pps:100972267	UniProtKB/TrEMBL
NCBI Gene	METTL23	ENTREZGENE
PANTHER	METHYLTRANSFERASE-LIKE PROTEIN 23	UniProtKB/TrEMBL
	PTHR14614	UniProtKB/TrEMBL
Pfam	Methyltransf_16	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	A0A2R8ZYU7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-02	METTL23	methyltransferase 23, arginine	METTL23	methyltransferase like 23	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM