LOC100993185 (putative phosphoserine phosphatase-like protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100993185 (putative phosphoserine phosphatase-like protein) Pan paniscus
Analyze
Symbol: LOC100993185
Name: putative phosphoserine phosphatase-like protein
RGD ID: 11880518
Description: ENCODES a protein that exhibits identical protein binding (ortholog); L-phosphoserine phosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); L-serine biosynthetic process (ortholog); L-serine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH amelogenesis imperfecta (ortholog); amino acid metabolic disorder (ortholog); autistic disorder (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphoserine phosphatase; PSPH
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,590,596 - 60,615,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17108,915,322 - 108,940,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,351,434 - 56,376,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1756,772,872 - 56,799,703 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
LOC100993185
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,590,596 - 60,615,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17108,915,322 - 108,940,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,351,434 - 56,376,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1756,772,872 - 56,799,703 (+)NCBIpanpan1.1PanPan1.1panPan2
PSPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38756,011,064 - 56,051,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl756,011,051 - 56,051,604 (-)EnsemblGRCh38hg38GRCh38
GRCh37756,078,757 - 56,119,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36756,046,238 - 56,086,762 (-)NCBINCBI36Build 36hg18NCBI36
Build 34755,852,953 - 55,893,477NCBI
Celera767,132,178 - 67,172,669 (-)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,892,706 - 55,933,068 (-)NCBIHuRef
CHM1_1756,081,776 - 56,122,305 (-)NCBICHM1_1
T2T-CHM13v2.0756,170,861 - 56,211,278 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2756,082,991 - 56,123,515 (-)NCBI
Psph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,842,622 - 129,864,318 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,842,622 - 129,864,513 (-)EnsemblGRCm39 Ensembl
GRCm385129,765,558 - 129,787,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,765,558 - 129,787,449 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,271,434 - 130,293,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,080,273 - 130,101,913 (-)NCBIMGSCv36mm8
Celera5126,809,895 - 126,831,826 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Psph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,527,091 - 32,541,182 (+)NCBIGRCr8
mRatBN7.21226,882,524 - 26,905,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,883,133 - 26,905,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,027,799 - 28,041,053 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,638,338 - 28,651,592 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,699,824 - 27,713,078 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,514,128 - 30,526,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,514,112 - 30,526,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,455,767 - 32,468,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,969,748 - 27,984,318 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,833,136 - 27,847,706 (-)NCBI
Celera1228,596,700 - 28,610,791 (+)NCBICelera
Cytogenetic Map12q13NCBI
Psph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,198,739 - 8,212,025 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,198,739 - 8,212,111 (-)NCBIChiLan1.0ChiLan1.0
PSPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16493,152 - 546,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6493,176 - 512,089 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,192,384 - 2,245,452 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06296,475 - 349,789 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6295,715 - 349,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16240,702 - 293,550 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06234,329 - 287,631 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06405,548 - 458,858 (-)NCBIUU_Cfam_GSD_1.0
Psph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,114,035 - 126,136,253 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,900,283 - 7,922,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,900,319 - 7,922,529 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,877,923 - 16,907,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,877,904 - 16,903,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,136,056 - 17,161,335 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,728,490 - 2,761,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl212,753,284 - 2,757,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041179,930,973 - 179,974,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,213,574 - 8,226,224 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,212,051 - 8,233,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063605746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_063605746   ⟹   XP_063461816
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2660,590,596 - 60,615,897 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063461816 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063461816   ⟸   XM_063605746


Additional Information

Database Acc Id Source(s)
NCBI Gene PSPH ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100993185  putative phosphoserine phosphatase-like protein  PSPH  phosphoserine phosphatase  Symbol and/or name change 5135510 APPROVED