CCNL2 (cyclin L2) - Rat Genome Database

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Gene: CCNL2 (cyclin L2) Pan paniscus
Analyze
Symbol: CCNL2
Name: cyclin L2
RGD ID: 11878818
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (inferred); INVOLVED IN regulation of RNA splicing (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cyclin-dependent protein kinase holoenzyme complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-L2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,826,053 - 226,839,037 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,523,620 - 225,536,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,530 - 155,377 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,343,608 - 1,355,392 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,344,346 - 1,355,361 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,826,053 - 226,839,037 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,523,620 - 225,536,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,530 - 155,377 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,343,608 - 1,355,392 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,344,346 - 1,355,361 (-)Ensemblpanpan1.1panPan2
CCNL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,385,711 - 1,399,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,385,711 - 1,399,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,321,091 - 1,334,715 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,310,954 - 1,324,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera11,246,539 - 1,260,165 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1593,397 - 606,925 (-)NCBIHuRef
CHM1_111,308,113 - 1,322,132 (-)NCBICHM1_1
T2T-CHM13v2.01817,645 - 832,544 (-)NCBIT2T-CHM13v2.0
Ccnl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,894,468 - 155,909,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,896,946 - 155,909,000 (+)EnsemblGRCm39 Ensembl
GRCm384155,810,219 - 155,824,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,812,489 - 155,824,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,186,598 - 155,198,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,656,289 - 154,668,343 (+)NCBIMGSCv36mm8
Celera4158,083,766 - 158,095,796 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.47NCBI
Ccnl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,698,951 - 171,711,037 (+)NCBIGRCr8
mRatBN7.25166,416,940 - 166,428,997 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,417,508 - 166,436,882 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,122,392 - 169,133,662 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,943,811 - 170,955,083 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,906,342 - 170,917,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,256,301 - 173,268,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,256,637 - 173,276,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,731,925 - 176,743,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,666,512 - 172,673,024 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,677,006 - 172,683,515 (+)NCBI
Celera5164,618,287 - 164,624,788 (+)NCBICelera
Cytogenetic Map5q36NCBI
Ccnl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,423,491 - 9,432,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,423,491 - 9,432,811 (+)NCBIChiLan1.0ChiLan1.0
CCNL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,542,358 - 56,550,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,542,566 - 56,550,691 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,618,538 - 56,626,881 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,744,445 - 56,752,791 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,744,452 - 56,752,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,735,164 - 56,743,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,627,430 - 56,635,773 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,017,713 - 57,026,057 (-)NCBIUU_Cfam_GSD_1.0
Ccnl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,692,794 - 27,700,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,764,189 - 1,772,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,765,027 - 1,773,156 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,659,054 - 63,668,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,659,053 - 63,668,077 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,269,483 - 58,271,859 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103225798
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,049,590 - 130,065,241 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,049,646 - 130,065,881 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,588,417 - 34,603,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,233,574 - 8,242,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,233,547 - 8,242,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000057799   ⟹   ENSPPAP00000034914
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11,344,346 - 1,355,361 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057808   ⟹   ENSPPAP00000034923
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11,344,346 - 1,347,712 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057810   ⟹   ENSPPAP00000034925
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11,344,346 - 1,347,712 (-)Ensembl
RefSeq Acc Id: XM_034953029   ⟹   XP_034808920
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21226,826,053 - 226,839,037 (+)NCBI
NHGRI_mPanPan11225,523,620 - 225,536,617 (+)NCBI
Mhudiblu_PPA_v01142,530 - 155,376 (-)NCBI
RefSeq Acc Id: XM_034953034   ⟹   XP_034808925
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21226,832,773 - 226,839,037 (+)NCBI
NHGRI_mPanPan11225,530,331 - 225,536,617 (+)NCBI
Mhudiblu_PPA_v01142,530 - 148,793 (-)NCBI
RefSeq Acc Id: XM_055099488   ⟹   XP_054955463
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21226,832,751 - 226,839,037 (+)NCBI
NHGRI_mPanPan11225,530,314 - 225,536,617 (+)NCBI
RefSeq Acc Id: XR_008621345
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21226,826,165 - 226,834,104 (+)NCBI
NHGRI_mPanPan11225,523,732 - 225,531,664 (+)NCBI
RefSeq Acc Id: XR_010109337
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21226,826,165 - 226,834,740 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034808920 (Get FASTA)   NCBI Sequence Viewer  
  XP_034808925 (Get FASTA)   NCBI Sequence Viewer  
  XP_054955463 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034914.1
  ENSPPAP00000034923.1
  ENSPPAP00000034925.1
Reference Protein Sequences
RefSeq Acc Id: XP_034808920   ⟸   XM_034953029
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C916 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034808925   ⟸   XM_034953034
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000034914   ⟸   ENSPPAT00000057799
RefSeq Acc Id: ENSPPAP00000034925   ⟸   ENSPPAT00000057810
RefSeq Acc Id: ENSPPAP00000034923   ⟸   ENSPPAT00000057808
RefSeq Acc Id: XP_054955463   ⟸   XM_055099488
- Peptide Label: isoform X3
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057799.1 UniProtKB/TrEMBL
  ENSPPAT00000057808.1 UniProtKB/TrEMBL
  ENSPPAT00000057810.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CCNL2 ENTREZGENE
PANTHER COILED-COIL DOMAIN CONTAINING 122 UniProtKB/TrEMBL
  CYCLIN-L2 UniProtKB/TrEMBL
  PRIMATE-EXPANDED PROTEIN FAMILY UniProtKB/TrEMBL
  PTHR10026 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_L UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A2R9BZ20_PANPA UniProtKB/TrEMBL
  A0A2R9C2A6_PANPA UniProtKB/TrEMBL
  A0A2R9C916 ENTREZGENE, UniProtKB/TrEMBL