BOD1 (biorientation of chromosomes in cell division 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: BOD1 (biorientation of chromosomes in cell division 1) Pan paniscus
Analyze
Symbol: BOD1
Name: biorientation of chromosomes in cell division 1
RGD ID: 11871713
Description: ENCODES a protein that exhibits protein phosphatase 2A binding (inferred); protein phosphatase inhibitor activity (inferred); INVOLVED IN mitotic metaphase chromosome alignment (inferred); mitotic sister chromatid biorientation (inferred); mitotic sister chromatid cohesion, centromeric (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN Set1C/COMPASS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: biorientation of chromosomes in cell division protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,734,263 - 168,743,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,873,789 - 166,882,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,951,787 - 168,960,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,857,814 - 175,866,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,857,814 - 175,866,951 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,734,263 - 168,743,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,873,789 - 166,882,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,951,787 - 168,960,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,857,814 - 175,866,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,857,814 - 175,866,951 (-)Ensemblpanpan1.1panPan2
BOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,607,145 - 173,616,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,607,145 - 173,616,659 (-)EnsemblGRCh38hg38GRCh38
GRCh375173,034,148 - 173,043,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,967,146 - 172,976,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 345172,967,149 - 172,976,262NCBI
Celera5169,066,406 - 169,075,924 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5168,129,859 - 168,139,374 (-)NCBIHuRef
CHM1_15172,466,671 - 172,476,189 (-)NCBICHM1_1
T2T-CHM13v2.05174,147,207 - 174,156,712 (-)NCBIT2T-CHM13v2.0
Bod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,615,150 - 31,621,862 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,615,181 - 31,621,885 (-)EnsemblGRCm39 Ensembl
GRCm381131,665,150 - 31,671,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,665,181 - 31,671,885 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,565,150 - 31,571,862 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,565,150 - 31,571,862 (-)NCBIMGSCv36mm8
Celera1134,080,907 - 34,087,599 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.55NCBI
Bod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,497,918 - 16,504,259 (+)NCBIGRCr8
mRatBN7.21015,993,454 - 15,999,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,993,454 - 15,999,787 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,740,896 - 20,747,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,229,826 - 20,236,167 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,719,433 - 15,725,773 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,259,728 - 16,266,069 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,259,728 - 16,266,061 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,152,118 - 16,158,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,255,404 - 16,261,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,256,452 - 16,262,788 (+)NCBI
Celera1015,659,266 - 15,665,607 (+)NCBICelera
Cytogenetic Map10q12NCBI
Bod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540826,235,229 - 26,242,576 (-)NCBIChiLan1.0ChiLan1.0
BOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1438,888,096 - 38,895,539 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha438,834,963 - 38,842,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,259,503 - 39,266,976 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1439,077,779 - 39,085,242 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,266,320 - 39,273,785 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0439,774,971 - 39,782,432 (+)NCBIUU_Cfam_GSD_1.0
Bod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,357,695 - 93,425,351 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366092,034,271 - 2,096,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11650,734,510 - 50,743,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21654,988,365 - 54,996,776 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,761,476 - 75,771,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660342,834,544 - 2,844,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,459,383 - 16,469,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000043146   ⟹   ENSPPAP00000020354
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5175,857,814 - 175,866,951 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043158   ⟹   ENSPPAP00000020365
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5175,858,545 - 175,866,707 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043163   ⟹   ENSPPAP00000020370
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5175,858,552 - 175,866,707 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043168   ⟹   ENSPPAP00000020375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5175,861,921 - 175,866,707 (-)Ensembl
RefSeq Acc Id: XM_055112878   ⟹   XP_054968853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24168,735,951 - 168,743,400 (-)NCBI
NHGRI_mPanPan15166,875,493 - 166,882,940 (-)NCBI
RefSeq Acc Id: XM_055112879   ⟹   XP_054968854
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24168,734,263 - 168,743,408 (-)NCBI
NHGRI_mPanPan15166,873,789 - 166,882,948 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054968853 (Get FASTA)   NCBI Sequence Viewer  
  XP_054968854 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020354.1
  ENSPPAP00000020365.1
  ENSPPAP00000020370.1
  ENSPPAP00000020375.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000020365   ⟸   ENSPPAT00000043158
RefSeq Acc Id: ENSPPAP00000020370   ⟸   ENSPPAT00000043163
RefSeq Acc Id: ENSPPAP00000020375   ⟸   ENSPPAT00000043168
RefSeq Acc Id: ENSPPAP00000020354   ⟸   ENSPPAT00000043146
RefSeq Acc Id: XP_054968854   ⟸   XM_055112879
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AX26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054968853   ⟸   XM_055112878
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZ56 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033401 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043146.1 UniProtKB/TrEMBL
  ENSPPAT00000043158.1 UniProtKB/TrEMBL
  ENSPPAT00000043163.1 UniProtKB/TrEMBL
  ENSPPAT00000043168.1 UniProtKB/TrEMBL
InterPro Bod1-like UniProtKB/TrEMBL
KEGG Report pps:100983959 UniProtKB/TrEMBL
NCBI Gene BOD1 ENTREZGENE
PANTHER BIORIENTATION OF CHROMOSOMES IN CELL DIVISION PROTEIN 1-LIKE 1 UniProtKB/TrEMBL
  PTHR31532 UniProtKB/TrEMBL
Pfam COMPASS-Shg1 UniProtKB/TrEMBL
UniProt A0A2R9AX26 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AX30_PANPA UniProtKB/TrEMBL
  A0A2R9AX35_PANPA UniProtKB/TrEMBL
  A0A2R9AZ56 ENTREZGENE, UniProtKB/TrEMBL