SH3BP4 (SH3 domain binding protein 4) - Rat Genome Database

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Gene: SH3BP4 (SH3 domain binding protein 4) Pan paniscus
Analyze
Symbol: SH3BP4
Name: SH3 domain binding protein 4
RGD ID: 11857829
Description: ENCODES a protein that exhibits GDP-dissociation inhibitor activity (inferred); identical protein binding (inferred); small GTPase binding (inferred); INVOLVED IN amino acid import (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN clathrin-coated pit (inferred); clathrin-coated vesicle (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain-binding protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213137,575,355 - 137,680,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B137,590,334 - 137,695,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B122,179,431 - 122,284,430 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B241,089,624 - 241,149,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B241,089,624 - 241,149,524 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SH3BP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213137,575,355 - 137,680,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B137,590,334 - 137,695,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B122,179,431 - 122,284,430 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B241,089,624 - 241,149,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B241,089,624 - 241,149,524 (+)Ensemblpanpan1.1panPan2
SH3BP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382234,952,017 - 235,055,714 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2234,952,017 - 235,055,714 (+)EnsemblGRCh38hg38GRCh38
GRCh372235,860,661 - 235,964,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,525,367 - 235,629,097 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,642,685 - 235,746,356NCBI
Celera2229,577,847 - 229,681,460 (+)NCBICelera
Cytogenetic Map2q37.2NCBI
HuRef2227,700,099 - 227,760,480 (+)NCBIHuRef
CHM1_12235,866,502 - 235,970,051 (+)NCBICHM1_1
T2T-CHM13v2.02235,441,072 - 235,544,683 (+)NCBIT2T-CHM13v2.0
Sh3bp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39188,998,061 - 89,082,940 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl188,998,137 - 89,082,790 (+)EnsemblGRCm39 Ensembl
GRCm38189,070,333 - 89,155,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl189,070,415 - 89,155,068 (+)EnsemblGRCm38mm10GRCm38
MGSCv37190,967,037 - 91,050,368 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36190,901,633 - 90,984,964 (+)NCBIMGSCv36mm8
Celera192,032,349 - 92,112,519 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map145.05NCBI
Sh3bp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8997,107,877 - 97,186,878 (+)NCBIGRCr8
mRatBN7.2989,660,156 - 89,739,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl989,660,156 - 89,739,163 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx998,086,783 - 98,165,820 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09103,222,718 - 103,301,749 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09101,588,279 - 101,667,286 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0996,210,750 - 96,288,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl996,210,750 - 96,288,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0995,916,238 - 95,994,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4988,227,341 - 88,243,397 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1988,432,108 - 88,448,166 (+)NCBI
Celera987,214,924 - 87,293,877 (+)NCBICelera
Cytogenetic Map9q35NCBI
Sh3bp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554531,387,882 - 1,443,353 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554531,387,954 - 1,425,268 (-)NCBIChiLan1.0ChiLan1.0
SH3BP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12546,049,631 - 46,133,065 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2546,049,475 - 46,155,519 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2546,549,382 - 46,632,411 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02546,399,637 - 46,483,446 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2546,399,592 - 46,483,436 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12546,308,012 - 46,390,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02546,101,835 - 46,185,151 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02546,330,339 - 46,414,116 (+)NCBIUU_Cfam_GSD_1.0
Sh3bp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303188,215,750 - 188,245,868 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365252,692,786 - 2,707,177 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365252,693,828 - 2,757,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15135,003,511 - 135,094,797 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115135,003,501 - 135,094,801 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SH3BP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110120,974,110 - 121,075,584 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10121,054,665 - 121,073,708 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604078,392,522 - 78,496,002 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3bp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248471,044,831 - 1,078,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248471,007,940 - 1,078,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065352   ⟹   ENSPPAP00000042422
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B241,089,624 - 241,149,524 (+)Ensembl
RefSeq Acc Id: XM_034955405   ⟹   XP_034811296
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213137,575,355 - 137,680,832 (+)NCBI
NHGRI_mPanPan12B137,590,334 - 137,695,795 (+)NCBI
Mhudiblu_PPA_v02B122,179,431 - 122,284,430 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034811296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042422.1
Reference Protein Sequences
RefSeq Acc Id: XP_034811296   ⟸   XM_034955405
- UniProtKB: A0A2R9CSM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000042422   ⟸   ENSPPAT00000065352
Protein Domains
SH3   ZU5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043782 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065352.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.220.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SH3BP4_SH3 UniProtKB/TrEMBL
  ZU5_dom UniProtKB/TrEMBL
NCBI Gene SH3BP4 ENTREZGENE
PANTHER PTHR15603:SF3 UniProtKB/TrEMBL
  SH3 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A2R9CSM6 ENTREZGENE, UniProtKB/TrEMBL