LOC100978090 (protein ALEX) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100978090 (protein ALEX) Pan paniscus
Analyze
Symbol: LOC100978090 (Ensembl: GNAS)
Name: protein ALEX
RGD ID: 11837774
Description: ENCODES a protein that exhibits adenylate cyclase activator activity (inferred); adenylate cyclase regulator activity (inferred); beta-2 adrenergic receptor binding (inferred); INVOLVED IN adenylate cyclase-activating dopamine receptor signaling pathway (inferred); adenylate cyclase-activating G protein-coupled receptor signaling pathway (inferred); cartilage development (inferred); FOUND IN dendrite (inferred); heterotrimeric G-protein complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: guanine nucleotide-binding protein G(s) subunit alpha; guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas; LOC100992687
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,615,315 - 64,618,405 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,608,436 - 64,611,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,204,188 - 55,206,608 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,460,943 - 56,622,110 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,474,459 - 56,621,747 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034947359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042350   ⟹   ENSPPAP00000019582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2056,474,459 - 56,621,747 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042356   ⟹   ENSPPAP00000019588
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2056,474,459 - 56,476,861 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000042360   ⟹   ENSPPAP00000019592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2056,605,854 - 56,621,747 (+)Ensembl
RefSeq Acc Id: XM_034947359   ⟹   XP_034803250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22164,615,315 - 64,618,405 (+)NCBI
NHGRI_mPanPan12064,608,436 - 64,611,526 (+)NCBI
Mhudiblu_PPA_v02055,204,188 - 55,206,608 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034803250 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019582.1
  ENSPPAP00000019588.1
Reference Protein Sequences
RefSeq Acc Id: XP_034803250   ⟸   XM_034947359
RefSeq Acc Id: ENSPPAP00000019588   ⟸   ENSPPAT00000042356
RefSeq Acc Id: ENSPPAP00000019582   ⟸   ENSPPAT00000042350
RefSeq Acc Id: ENSPPAP00000019592   ⟸   ENSPPAT00000042360


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032982 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042350.1 UniProtKB/TrEMBL
  ENSPPAT00000042356.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.400.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Gprotein_alpha_S UniProtKB/TrEMBL
  Gprotein_alpha_su UniProtKB/TrEMBL
  GproteinA_insert UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC100978090 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) SUBUNIT ALPHA ISOFORMS XLAS UniProtKB/TrEMBL
  PTHR10218 UniProtKB/TrEMBL
Pfam G-alpha UniProtKB/TrEMBL
PRINTS GPROTEINA UniProtKB/TrEMBL
  GPROTEINAS UniProtKB/TrEMBL
PROSITE G_ALPHA UniProtKB/TrEMBL
SMART G_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF47895 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9AQF1_PANPA UniProtKB/TrEMBL
  A0A2R9AR04_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100978090  protein ALEX  LOC100978090  guanine nucleotide-binding protein G(s) subunit alpha  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100978090  guanine nucleotide-binding protein G(s) subunit alpha  LOC100992687  protein ALEX  Data merged from RGD:11716272 737654 PROVISIONAL