ARHGDIG (Rho GDP dissociation inhibitor gamma) - Rat Genome Database

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Gene: ARHGDIG (Rho GDP dissociation inhibitor gamma) Pan paniscus
Analyze
Symbol: ARHGDIG
Name: Rho GDP dissociation inhibitor gamma
RGD ID: 11836590
Description: ENCODES a protein that exhibits GDP-dissociation inhibitor activity (inferred); GTPase regulator activity (inferred); Rho GDP-dissociation inhibitor activity (inferred); INVOLVED IN blastocyst hatching (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho GDP-dissociation inhibitor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218498,860 - 501,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,291,760 - 4,294,086 (+)NCBINHGRI_mPanPan1
PanPan1.116271,736 - 273,605 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16271,739 - 273,605 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
membrane  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARHGDIG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218498,860 - 501,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,291,760 - 4,294,086 (+)NCBINHGRI_mPanPan1
PanPan1.116271,736 - 273,605 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16271,739 - 273,605 (+)Ensemblpanpan1.1panPan2
ARHGDIG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816280,591 - 283,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16280,450 - 283,010 (+)EnsemblGRCh38hg38GRCh38
GRCh3716330,591 - 333,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616270,607 - 273,004 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416270,627 - 273,701NCBI
Celera16530,508 - 532,906 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16241,938 - 251,249 (+)NCBIHuRef
CHM1_116330,546 - 332,944 (+)NCBICHM1_1
T2T-CHM13v2.016275,429 - 277,879 (+)NCBIT2T-CHM13v2.0
Arhgdig
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,418,157 - 26,420,324 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,418,157 - 26,426,760 (-)EnsemblGRCm39 Ensembl
GRCm381726,199,183 - 26,201,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,199,183 - 26,207,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,336,128 - 26,338,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,926,783 - 25,928,950 (-)NCBIMGSCv36mm8
Celera1726,732,940 - 26,735,160 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.07NCBI
Arhgdig
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,723,525 - 15,725,719 (-)NCBIGRCr8
mRatBN7.21015,219,049 - 15,221,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,219,049 - 15,221,213 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,958,820 - 19,960,982 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,447,699 - 19,449,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,946,979 - 14,949,141 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.01015,379,685 - 15,381,879 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,466,159 - 15,468,322 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,467,209 - 15,469,243 (-)NCBI
Celera1014,886,854 - 14,889,018 (-)NCBICelera
Cytogenetic Map10q12NCBI
Arhgdig
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,898,552 - 16,903,685 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,901,951 - 16,903,147 (-)NCBIChiLan1.0ChiLan1.0
ARHGDIG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,222,014 - 40,225,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,221,103 - 40,223,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,485,622 - 41,488,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,564,370 - 40,567,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,563,460 - 40,566,392 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,252,617 - 40,255,728 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,213,673 - 40,216,782 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,692,143 - 40,695,255 (-)NCBIUU_Cfam_GSD_1.0
Arhgdig
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,539,290 - 112,544,529 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501637,299 - 639,096 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501637,150 - 640,984 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGDIG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,397,643 - 41,400,241 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,397,640 - 41,402,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARHGDIG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15226,760 - 229,449 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5227,202 - 229,274 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,947,377 - 30,949,964 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgdig
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,133,421 - 1,135,403 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,133,381 - 1,135,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056446   ⟹   ENSPPAP00000033570
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl16271,739 - 273,605 (+)Ensembl
RefSeq Acc Id: XM_034951629   ⟹   XP_034807520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v218498,891 - 501,189 (+)NCBI
NHGRI_mPanPan1164,291,837 - 4,294,086 (+)NCBI
RefSeq Acc Id: XM_034951630   ⟹   XP_034807521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v218498,860 - 501,189 (+)NCBI
NHGRI_mPanPan1164,291,760 - 4,294,086 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034807520 (Get FASTA)   NCBI Sequence Viewer  
  XP_034807521 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033570.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000033570   ⟸   ENSPPAT00000056446
RefSeq Acc Id: XP_034807521   ⟸   XM_034951630
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BYK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034807520   ⟸   XM_034951629
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BYK7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056446.1 UniProtKB/TrEMBL
Gene3D-CATH 2.70.50.30 UniProtKB/TrEMBL
InterPro Ig_E-set UniProtKB/TrEMBL
  Rho_GDI UniProtKB/TrEMBL
  RhoGDI_dom_sf UniProtKB/TrEMBL
NCBI Gene ARHGDIG ENTREZGENE
PANTHER PTHR10980 UniProtKB/TrEMBL
  RHO GDP-DISSOCIATION INHIBITOR 3 UniProtKB/TrEMBL
Pfam Rho_GDI UniProtKB/TrEMBL
PRINTS RHOGDI UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A2R9BYK7 ENTREZGENE, UniProtKB/TrEMBL