TMEM168 (transmembrane protein 168) - Rat Genome Database

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Gene: TMEM168 (transmembrane protein 168) Pan paniscus
Analyze
Symbol: TMEM168
Name: transmembrane protein 168
RGD ID: 11828021
Description: ENCODES a protein that exhibits sodium channel regulator activity (inferred); INVOLVED IN regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (inferred); nuclear membrane (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26149,596,308 - 149,620,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan171,606,567 - 1,632,890 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07104,729,362 - 104,756,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17117,433,384 - 117,457,999 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7117,433,384 - 117,458,000 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM168
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26149,596,308 - 149,620,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan171,606,567 - 1,632,890 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07104,729,362 - 104,756,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17117,433,384 - 117,457,999 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7117,433,384 - 117,458,000 (-)Ensemblpanpan1.1panPan2
TMEM168
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387112,762,377 - 112,790,393 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7112,762,377 - 112,790,423 (-)EnsemblGRCh38hg38GRCh38
GRCh377112,402,432 - 112,430,448 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367112,193,023 - 112,217,714 (-)NCBINCBI36Build 36hg18NCBI36
Celera7107,217,551 - 107,242,217 (-)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7106,773,091 - 106,797,770 (-)NCBIHuRef
CHM1_17112,339,671 - 112,364,332 (-)NCBICHM1_1
T2T-CHM13v2.07114,080,668 - 114,108,691 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27111,774,269 - 111,798,936 (-)NCBI
Tmem168
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39613,580,688 - 13,608,097 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl613,580,686 - 13,608,099 (-)EnsemblGRCm39 Ensembl
GRCm38613,580,689 - 13,608,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl613,580,687 - 13,608,100 (-)EnsemblGRCm38mm10GRCm38
MGSCv37613,530,689 - 13,558,063 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36613,530,687 - 13,558,063 (-)NCBIMGSCv36mm8
Celera613,672,708 - 13,700,081 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.68NCBI
Tmem168
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8442,796,714 - 42,824,854 (-)NCBIGRCr8
mRatBN7.2441,830,623 - 41,858,763 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl441,830,624 - 41,858,776 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx446,807,390 - 46,834,480 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0442,728,393 - 42,755,484 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0441,137,097 - 41,164,187 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0440,006,362 - 40,041,129 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl440,007,844 - 40,036,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0439,840,355 - 39,868,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4439,012,323 - 39,039,671 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1439,130,864 - 39,158,211 (-)NCBI
Celera437,179,920 - 37,207,841 (-)NCBICelera
Cytogenetic Map4q21NCBI
Tmem168
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543219,002,083 - 19,032,432 (-)NCBIChiLan1.0ChiLan1.0
TMEM168
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11452,312,109 - 52,340,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1452,314,856 - 52,338,214 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1451,771,324 - 51,801,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01452,341,015 - 52,371,609 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1452,341,352 - 52,374,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11452,381,313 - 52,411,795 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01452,055,666 - 52,086,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01452,438,340 - 52,468,897 (-)NCBIUU_Cfam_GSD_1.0
Tmem168
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511840,990,152 - 41,018,604 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365895,671,182 - 5,699,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM168
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1832,927,748 - 32,957,960 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11832,928,104 - 32,960,884 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21835,535,714 - 35,603,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM168
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12181,567,647 - 81,594,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604222,209,045 - 22,235,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem168
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248276,526,073 - 6,557,851 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248276,522,145 - 6,557,543 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000062085   ⟹   ENSPPAP00000039176
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7117,433,384 - 117,458,000 (-)Ensembl
RefSeq Acc Id: XM_003811232   ⟹   XP_003811280
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26149,596,308 - 149,620,887 (-)NCBI
NHGRI_mPanPan171,606,567 - 1,632,890 (-)NCBI
Mhudiblu_PPA_v07104,729,362 - 104,756,294 (-)NCBI
PanPan1.17117,433,384 - 117,457,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008963614   ⟹   XP_008961862
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26149,596,308 - 149,620,903 (-)NCBI
NHGRI_mPanPan171,606,567 - 1,632,890 (-)NCBI
Mhudiblu_PPA_v07104,729,362 - 104,756,294 (-)NCBI
PanPan1.17117,434,842 - 117,457,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024929662   ⟹   XP_024785430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26149,596,308 - 149,620,776 (-)NCBI
NHGRI_mPanPan171,606,567 - 1,632,890 (-)NCBI
Mhudiblu_PPA_v07104,729,362 - 104,756,299 (-)NCBI
PanPan1.17117,433,384 - 117,457,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063606353   ⟹   XP_063462423
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26149,596,308 - 149,620,783 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003811280 (Get FASTA)   NCBI Sequence Viewer  
  XP_008961862 (Get FASTA)   NCBI Sequence Viewer  
  XP_024785430 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039176.1
Reference Protein Sequences
RefSeq Acc Id: XP_003811280   ⟸   XM_003811232
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CB71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008961862   ⟸   XM_008963614
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CB71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024785430   ⟸   XM_024929662
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000039176   ⟸   ENSPPAT00000062085
RefSeq Acc Id: XP_063462423   ⟸   XM_063606353
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CB71 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042305 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062085.1 UniProtKB/TrEMBL
InterPro TMEM168 UniProtKB/TrEMBL
KEGG Report pps:100974739 UniProtKB/TrEMBL
NCBI Gene TMEM168 ENTREZGENE
PANTHER PTHR14437 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 168 UniProtKB/TrEMBL
UniProt A0A2R9CB71 ENTREZGENE, UniProtKB/TrEMBL