ERICH6 (glutamate rich 6) - Rat Genome Database

Name: ERICH6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ERICH6 (glutamate rich 6) Pan paniscus

Analyze

Symbol:

ERICH6

Name:

glutamate rich 6

RGD ID:

11824313

Description:

ASSOCIATED WITH glycogen storage disease XV (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

FAM194A; family with sequence similarity 194, member A; glutamate-rich protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERICH6 (glutamate rich 6)	NCBI	Ortholog
Mus musculus (house mouse):	Erich6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Erich6 (glutamate-rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Erich6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERICH6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Erich6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERICH6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ERICH6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Erich6 (glutamate rich 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	148,549,083 - 148,594,337 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	148,553,812 - 148,599,066 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	147,678,236 - 147,723,217 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	155,251,798 - 155,295,829 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	155,251,798 - 155,295,829 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

glycogen storage disease XV (ISO)

References

Genomics

Comparative Map Data

ERICH6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	148,549,083 - 148,594,337 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	148,553,812 - 148,599,066 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	147,678,236 - 147,723,217 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	155,251,798 - 155,295,829 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	155,251,798 - 155,295,829 (-)	Ensembl	panpan1.1		panPan2

ERICH6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	150,659,885 - 150,703,920 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	150,659,885 - 150,703,971 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	150,377,672 - 150,421,707 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	151,860,365 - 151,904,432 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	148,790,766 - 148,834,837 (-)	NCBI		Celera
Cytogenetic Map	3	q25.1	NCBI
HuRef	3	147,751,355 - 147,795,444 (-)	NCBI		HuRef
CHM1_1	3	150,340,702 - 150,384,788 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	153,411,110 - 153,455,167 (-)	NCBI		T2T-CHM13v2.0

Erich6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	58,523,721 - 58,544,639 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	58,523,721 - 58,544,628 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	58,616,300 - 58,637,220 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	58,616,300 - 58,637,207 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	58,420,222 - 58,441,129 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	58,704,229 - 58,725,136 (-)	NCBI		MGSCv36	mm8
Celera	3	58,318,976 - 58,331,813 (-)	NCBI		Celera
Cytogenetic Map	3	D	NCBI
cM Map	3	28.64	NCBI

Erich6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	145,001,833 - 145,027,935 (-)	NCBI		GRCr8
mRatBN7.2	2	142,851,905 - 142,878,010 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	142,851,905 - 142,884,320 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	149,490,290 - 149,516,306 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	147,596,953 - 147,622,861 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	142,229,385 - 142,255,293 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	148,812,060 - 148,861,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	148,811,907 - 148,838,441 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	168,229,962 - 168,256,064 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	147,960,550 - 147,986,652 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	137,280,288 - 137,306,254 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

Erich6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	1,824,395 - 1,859,042 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955448	1,827,296 - 1,860,699 (-)	NCBI	ChiLan1.0	ChiLan1.0

ERICH6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	45,290,021 - 45,321,238 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	45,290,028 - 45,320,774 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	45,157,357 - 45,188,380 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	45,917,984 - 45,949,508 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	45,917,991 - 45,950,109 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	45,508,446 - 45,539,934 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	45,560,355 - 45,591,928 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	45,836,509 - 45,867,999 (-)	NCBI		UU_Cfam_GSD_1.0

Erich6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	90,692,184 - 90,715,445 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936758	1,052,357 - 1,075,657 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936758	1,052,410 - 1,077,918 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERICH6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	90,870,496 - 90,911,109 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	90,868,620 - 90,915,297 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	98,951,848 - 99,001,069 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ERICH6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	39,983,346 - 40,029,632 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	39,984,115 - 40,029,625 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	12,802,820 - 12,849,694 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Erich6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	28,066,422 - 28,101,652 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	28,066,416 - 28,115,523 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000055008 ⟹ ENSPPAP00000032142

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	155,251,798 - 155,295,829 (-)	Ensembl

RefSeq Acc Id:

XM_003826468 ⟹ XP_003826516

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	148,549,083 - 148,594,337 (-)	NCBI
NHGRI_mPanPan1	3	148,553,812 - 148,599,066 (-)	NCBI
Mhudiblu_PPA_v0	3	147,678,236 - 147,723,217 (-)	NCBI
PanPan1.1	3	155,251,798 - 155,295,829 (-)	NCBI

Sequence:

show sequence

AGAGGCTCGCGCTCGCGAGAGCCGACCGGGGCCGCGGCCAAAGAGCTGGCTGTAATCCCGCCTC
CCGCCAGCCATGGCCCACTTGCGCTCGCCTAGCGGCTTCGGAGACCCGGGGAAGAAGGACCAGA
AGGAGTCAGAGGAGGAGTTAGAGGAGGAGGAGGAGGAAGAGGTGGAGGAGGAGGAAGAGGTGGA
GGAGGAGGAAGAGGTGGAGGAGGAGGAAGAGGTGGAGGTGGAGGAGGAGGAGGTGGTGGAGGAG
GAGTTGGTGGGGGAAGAGCAGGAGTTGGAGGCCCCTGAGACGTTCAGCGAAGAGTACCTCTGGA
AGGTCACGGACATCGGTGACTACGACGACGACTTCCTAGACGTGCGCCCCCGCTTAGCCAGCAT
CGTCAGCCCTAGCCTGACCTCTACGTTCGTGCCCAGCCAGAGCGCGACCAGCACTGAAACGCCG
AGCGCAAGCCCACCCTCCAGCACCTCCTCGCATAAAAGTTTCCCTAAAATATTTCAGACATTTA
GGAAAGACATGTCTGAAATGAGTATAGATAGAAATATTCATCGCAATTTGTCTCCAGGAATTCC
AGTATCAGTACAAACAGAAGAAAGTTGGCTCCAAGATTTGTCTGATAATGTGCAATCGAGGAAG
AAAGCCTCTAAAGAGAAAGCTGAACCTGAATGTCTGGCATCTAAGTTAAGAGAAAAATGGGTAA
TTAATCCAGAAGAGTCGAAACTAAATATTTTATATGAGCTGGAGTTTAAGGAAGACTTCATAAC
ACTGTTCGAGCCTTCTCTAAGAACGTTACCCAGCATCGGACCACCATCCATTCTGGCATACAAA
GAAGAGAGCTCCAATTTAGGCATTAACTTCAAGGATGAAGAGGAGGAGACATCACCCAAATGTG
AATTTTGTGGCAGCGATCTAAGAGCATTTTTTTCTAATGTGGATGTTTCCTCTGAACCAAAAGG
GCATGCCTCCTGTTGTATTGCTTTCCAAAATCTGATTGACTATATCTATGAGGAGCAAATAAAA
ACCAAACCCCCTAAACCTGAATTAATTGCTATTGACCCTCATGCAGCCCATGGCAGTGAGATCG
ACAGACTCAAGGCAAAAGAAAAAGCCCTGCAAAGGAAACAGGAGCAACGAATGGCCAGACATTT
TGCAATAATATCAAGGGAACAGACTCATTTCTCTGAAGATGATTCAAAGCGCTTAAAAACAATT
TCTTATCAACTTTCTGTGGATATTCCAGAAAAACAGATAATTGATGACATTGTATTTGATTTTC
AACTAAGAAACAGTAACATGTCTATCATTTGTTGTGATTCTCGGATAGCATGTGGAAAGGTTGT
CAAGAATGAGCTCTTAGAGAAGCACTACAAACATGGGAGCAAGTTTCTGACTTCATTTCCAGAT
GGGACAACACAAATATTCTATCCATCTGGAAACCTAGCCATCATTCGAGTGCCCAACAAGGTAA
ATGGTTTTACTTGTATAGTCCAAGAAGATATGCCCACTAACCCTGCTATCCTAGCAGTGCTGGA
TTCCTCTGGCAGAAGTTCCTGCTATCATCCCAATGGAAATGTCTGGGTATACATCAATATCTTG
GGAGGTCAATATTCAGATCAAGCCGGCAACAGAATAAGGGCTTGGAATTGGTCAAATTCCATCA
CTTCCTCACCCTTTGTTTCATTTAAACCTGTCTTTCTGGCTTTGAACCGTTATATTGGAGTCCG
CATCTTAGAACAAGACAAGATTTCTATAACTTTTCTAGCAATGGGCCAACAGGCAAGAATCAGT
GTTGGAACCAAAGTGAAGCTACCAAACCCTGAGGAGATTCCAATCCTCCGATACGTAAGTGGAG
ATGACCTTCTTCTGCTGGCCAGTTTAATAAAGATCCGTCGCCTGTTTCATAAACTTGAAGGATG
TGTGAATTTTCCCTCAAGCCAGGTTTGGGAAAAATTAAAGCAACCTTCCTACCTTTCTTCACTT
TCTCTGAAACTAATTGCCCTTTGTCACAGTTCTGGTATAAAGCAAGATATAATGAAGACAATAA
GAAATATAATAAATGAAGAAATTTAACTAAGAA

hide sequence

RefSeq Acc Id:

XM_055110601 ⟹ XP_054966576

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	148,549,083 - 148,594,337 (-)	NCBI
NHGRI_mPanPan1	3	148,553,812 - 148,599,066 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003826516	(Get FASTA)	NCBI Sequence Viewer
	XP_054966576	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000032142.1

RefSeq Acc Id:	XP_003826516 ⟸ XM_003826468
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BR41 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAHLRSPSGFGDPGKKDQKESEEELEEEEEEEVEEEEEVEEEEEVEEEEEVEVEEEEVVEEELV GEEQELEAPETFSEEYLWKVTDIGDYDDDFLDVRPRLASIVSPSLTSTFVPSQSATSTETPSAS PPSSTSSHKSFPKIFQTFRKDMSEMSIDRNIHRNLSPGIPVSVQTEESWLQDLSDNVQSRKKAS KEKAEPECLASKLREKWVINPEESKLNILYELEFKEDFITLFEPSLRTLPSIGPPSILAYKEES SNLGINFKDEEEETSPKCEFCGSDLRAFFSNVDVSSEPKGHASCCIAFQNLIDYIYEEQIKTKP PKPELIAIDPHAAHGSEIDRLKAKEKALQRKQEQRMARHFAIISREQTHFSEDDSKRLKTISYQ LSVDIPEKQIIDDIVFDFQLRNSNMSIICCDSRIACGKVVKNELLEKHYKHGSKFLTSFPDGTT QIFYPSGNLAIIRVPNKVNGFTCIVQEDMPTNPAILAVLDSSGRSSCYHPNGNVWVYINILGGQ YSDQAGNRIRAWNWSNSITSSPFVSFKPVFLALNRYIGVRILEQDKISITFLAMGQQARISVGT KVKLPNPEEIPILRYVSGDDLLLLASLIKIRRLFHKLEGCVNFPSSQVWEKLKQPSYLSSLSLK LIALCHSSGIKQDIMKTIRNIINEEI hide sequence

RefSeq Acc Id:

ENSPPAP00000032142 ⟸ ENSPPAT00000055008

RefSeq Acc Id:	XP_054966576 ⟸ XM_055110601
- Peptide Label:	isoform X2

Protein Domains

FAM194 C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000038963	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000055008.1	UniProtKB/TrEMBL
InterPro	FAM194_C	UniProtKB/TrEMBL
KEGG Report	pps:100981936	UniProtKB/TrEMBL
NCBI Gene	ERICH6	ENTREZGENE
PANTHER	GLUTAMATE-RICH PROTEIN 6	UniProtKB/TrEMBL
	SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20	UniProtKB/TrEMBL
Pfam	FAM194	UniProtKB/TrEMBL
UniProt	A0A2R9BR41	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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