CNOT9 (CCR4-NOT transcription complex subunit 9) - Rat Genome Database

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Gene: CNOT9 (CCR4-NOT transcription complex subunit 9) Pan paniscus
Analyze
Symbol: CNOT9
Name: CCR4-NOT transcription complex subunit 9
RGD ID: 11821689
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (inferred); kinase binding (inferred); nuclear receptor coactivator activity (inferred); INVOLVED IN cytokine-mediated signaling pathway (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); gastric adenocarcinoma (ortholog); FOUND IN CCR4-NOT complex (inferred); CCR4-NOT core complex (inferred); P-body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell differentiation protein RCD1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,199,746 - 121,227,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,214,711 - 121,242,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,826,633 - 105,854,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,422,472 - 224,450,141 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,422,467 - 224,450,133 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CNOT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,199,746 - 121,227,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,214,711 - 121,242,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,826,633 - 105,854,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,422,472 - 224,450,141 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,422,467 - 224,450,133 (+)Ensemblpanpan1.1panPan2
CNOT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,568,839 - 218,597,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,568,580 - 218,597,080 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,433,562 - 219,461,803 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,141,922 - 219,167,243 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,259,182 - 219,284,504NCBI
Celera2213,201,461 - 213,226,753 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,286,392 - 211,314,470 (+)NCBIHuRef
CHM1_12219,440,299 - 219,468,136 (+)NCBICHM1_1
T2T-CHM13v2.02219,055,409 - 219,083,622 (+)NCBIT2T-CHM13v2.0
Cnot9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,545,192 - 74,570,001 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,545,217 - 74,570,001 (+)EnsemblGRCm39 Ensembl
GRCm38174,506,036 - 74,530,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,506,058 - 74,530,842 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,552,634 - 74,577,416 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,439,265 - 74,464,048 (+)NCBIMGSCv36mm8
Celera175,063,648 - 75,088,335 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Cnot9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,533,369 - 83,558,207 (+)NCBIGRCr8
mRatBN7.2976,084,269 - 76,109,111 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,084,334 - 76,109,100 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,529,408 - 84,554,235 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,658,357 - 89,683,184 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,044,535 - 88,069,367 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,783,349 - 81,808,815 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,783,349 - 81,808,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,547,682 - 81,573,457 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,843,388 - 73,870,449 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,990,369 - 74,017,421 (+)NCBI
Celera973,657,770 - 73,682,385 (+)NCBICelera
Cytogenetic Map9q33NCBI
Cnot9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,816,910 - 14,845,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,819,007 - 14,845,879 (-)NCBIChiLan1.0ChiLan1.0
CNOT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,186,928 - 25,213,255 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,187,066 - 25,212,642 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,006,559 - 26,033,165 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,202,576 - 25,229,178 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,202,854 - 25,230,708 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,107,513 - 25,134,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,041,698 - 25,068,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,061,893 - 25,088,503 (+)NCBIUU_Cfam_GSD_1.0
Cnot9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,680,309 - 174,706,189 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,022,979 - 1,049,136 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,023,057 - 1,048,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,590,641 - 120,623,898 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,590,354 - 120,622,203 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,604,829 - 133,636,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,473,215 - 104,502,321 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,473,216 - 104,503,007 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,903,347 - 94,933,564 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,450,656 - 6,484,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,449,165 - 6,484,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051125   ⟹   ENSPPAP00000028279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,422,467 - 224,447,593 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051140   ⟹   ENSPPAP00000028294
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,422,470 - 224,450,133 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051156   ⟹   ENSPPAP00000028310
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,422,848 - 224,448,001 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000051171   ⟹   ENSPPAP00000028324
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B224,433,721 - 224,448,001 (+)Ensembl
RefSeq Acc Id: XM_003818620   ⟹   XP_003818668
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,199,746 - 121,227,266 (+)NCBI
NHGRI_mPanPan12B121,214,711 - 121,242,232 (+)NCBI
Mhudiblu_PPA_v02B105,826,641 - 105,854,415 (+)NCBI
PanPan1.12B224,422,474 - 224,450,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008971940   ⟹   XP_008970188
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,199,746 - 121,227,266 (+)NCBI
NHGRI_mPanPan12B121,214,711 - 121,242,232 (+)NCBI
Mhudiblu_PPA_v02B105,826,643 - 105,851,862 (+)NCBI
PanPan1.12B224,422,472 - 224,447,593 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003818668 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028279
  ENSPPAP00000028279.1
  ENSPPAP00000028294
  ENSPPAP00000028294.1
  ENSPPAP00000028310.1
  ENSPPAP00000028324.1
Reference Protein Sequences
RefSeq Acc Id: XP_008970188   ⟸   XM_008971940
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BF52 (UniProtKB/TrEMBL),   A0A2R9BF96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003818668   ⟸   XM_003818620
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BF69 (UniProtKB/TrEMBL),   A0A2R9BF96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000028279   ⟸   ENSPPAT00000051125
RefSeq Acc Id: ENSPPAP00000028324   ⟸   ENSPPAT00000051171
RefSeq Acc Id: ENSPPAP00000028294   ⟸   ENSPPAT00000051140
RefSeq Acc Id: ENSPPAP00000028310   ⟸   ENSPPAT00000051156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037194 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051125.1 UniProtKB/TrEMBL
  ENSPPAT00000051140.1 UniProtKB/TrEMBL
  ENSPPAT00000051156.1 UniProtKB/TrEMBL
  ENSPPAT00000051171.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CNOT9 UniProtKB/TrEMBL
KEGG Report pps:100986562 UniProtKB/TrEMBL
NCBI Gene CNOT9 ENTREZGENE
PANTHER PTHR12262:SF0 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Rcd1 UniProtKB/TrEMBL
PRINTS F138DOMAIN UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9BF52 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BF69 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BF90_PANPA UniProtKB/TrEMBL
  A0A2R9BF96 ENTREZGENE, UniProtKB/TrEMBL