CARMIL3 (capping protein regulator and myosin 1 linker 3) - Rat Genome Database

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Gene: CARMIL3 (capping protein regulator and myosin 1 linker 3) Pan paniscus
Analyze
Symbol: CARMIL3
Name: capping protein regulator and myosin 1 linker 3
RGD ID: 11820321
Description: INVOLVED IN regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); polycystic ovary syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: capping protein, Arp2/3 and myosin-I linker protein 3; leucine-rich repeat-containing protein 16B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,624,130 - 24,642,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,830,041 - 4,847,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,954,274 - 22,971,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,954,274 - 22,971,981 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CARMIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,624,130 - 24,642,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,830,041 - 4,847,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,954,274 - 22,971,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,954,274 - 22,971,981 (+)Ensemblpanpan1.1panPan2
CARMIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,052,009 - 24,069,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,052,009 - 24,069,729 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,521,218 - 24,538,938 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,591,046 - 23,608,777 (+)NCBINCBI36Build 36hg18NCBI36
Celera144,385,685 - 4,403,416 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef144,636,144 - 4,653,872 (+)NCBIHuRef
CHM1_11424,519,882 - 24,537,614 (+)NCBICHM1_1
T2T-CHM13v2.01418,250,326 - 18,268,045 (+)NCBIT2T-CHM13v2.0
Carmil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,728,108 - 55,745,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,728,108 - 55,745,729 (+)EnsemblGRCm39 Ensembl
GRCm381455,490,651 - 55,508,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,490,651 - 55,508,272 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,109,930 - 56,127,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,445,164 - 54,462,335 (+)NCBIMGSCv36mm8
Celera1453,296,005 - 53,313,185 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Carmil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,948,228 - 32,965,829 (+)NCBIGRCr8
mRatBN7.21528,978,440 - 28,995,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,979,007 - 28,996,225 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,824,712 - 30,841,566 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,971,920 - 31,988,774 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,214,268 - 30,231,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,167,146 - 34,184,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,167,945 - 34,184,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,057,562 - 38,075,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,622,020 - 33,639,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,645,651 - 33,654,958 (+)NCBI
Celera1528,555,021 - 28,571,875 (+)NCBICelera
Cytogenetic Map15p13NCBI
Carmil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,324,474 - 36,340,931 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,324,141 - 36,341,648 (-)NCBIChiLan1.0ChiLan1.0
CARMIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,059,154 - 4,076,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,059,133 - 4,076,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,981,155 - 3,998,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,169,943 - 4,187,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,169,881 - 4,187,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,860,706 - 3,877,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,922,469 - 3,939,569 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,184,546 - 4,201,662 (+)NCBIUU_Cfam_GSD_1.0
Carmil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,908,398 - 35,925,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722464,240 - 480,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722463,791 - 480,594 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,222,528 - 75,241,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,222,528 - 75,241,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,492,975 - 80,511,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,034,790 - 1,053,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,035,947 - 1,052,844 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,717,257 - 12,735,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Carmil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,459,756 - 8,477,287 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,460,032 - 8,477,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048202   ⟹   ENSPPAP00000025375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1422,954,274 - 22,971,981 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048208   ⟹   ENSPPAP00000025381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1422,954,431 - 22,971,653 (+)Ensembl
RefSeq Acc Id: XM_003809065   ⟹   XP_003809113
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,408,142 - 25,425,858 (+)NCBI
NHGRI_mPanPan11424,624,634 - 24,642,353 (+)NCBI
Mhudiblu_PPA_v0144,830,041 - 4,847,733 (+)NCBI
PanPan1.11422,954,274 - 22,971,981 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008961203   ⟹   XP_008959451
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,408,145 - 25,425,859 (+)NCBI
NHGRI_mPanPan11424,624,637 - 24,642,353 (+)NCBI
Mhudiblu_PPA_v0144,830,041 - 4,847,882 (+)NCBI
PanPan1.11422,954,291 - 22,971,981 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034937315   ⟹   XP_034793206
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,408,145 - 25,425,859 (+)NCBI
NHGRI_mPanPan11424,624,637 - 24,642,370 (+)NCBI
Mhudiblu_PPA_v0144,830,041 - 4,847,897 (+)NCBI
RefSeq Acc Id: XM_055097360   ⟹   XP_054953335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,539 (+)NCBI
RefSeq Acc Id: XM_055097361   ⟹   XP_054953336
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,531 (+)NCBI
RefSeq Acc Id: XM_055097362   ⟹   XP_054953337
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,528 (+)NCBI
RefSeq Acc Id: XM_055097363   ⟹   XP_054953338
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,560 (+)NCBI
RefSeq Acc Id: XM_055097364   ⟹   XP_054953339
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,535 (+)NCBI
RefSeq Acc Id: XM_055097365   ⟹   XP_054953340
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,532 (+)NCBI
RefSeq Acc Id: XM_055097366   ⟹   XP_054953341
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,544 (+)NCBI
RefSeq Acc Id: XM_055097367   ⟹   XP_054953342
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,859 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,522 (+)NCBI
RefSeq Acc Id: XM_055097368   ⟹   XP_054953343
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,859 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,525 (+)NCBI
RefSeq Acc Id: XM_055097369   ⟹   XP_054953344
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21525,407,638 - 25,425,859 (+)NCBI
NHGRI_mPanPan11424,624,130 - 24,642,364 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003809113   ⟸   XM_003809065
- Peptide Label: isoform X13
- UniProtKB: A0A2R9BAR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008959451   ⟸   XM_008961203
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_034793206   ⟸   XM_034937315
- Peptide Label: isoform X11
RefSeq Acc Id: ENSPPAP00000025381   ⟸   ENSPPAT00000048208
RefSeq Acc Id: ENSPPAP00000025375   ⟸   ENSPPAT00000048202
RefSeq Acc Id: XP_054953338   ⟸   XM_055097363
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054953341   ⟸   XM_055097366
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054953335   ⟸   XM_055097360
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054953339   ⟸   XM_055097364
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054953340   ⟸   XM_055097365
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054953336   ⟸   XM_055097361
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054953337   ⟸   XM_055097362
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054953343   ⟸   XM_055097368
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054953342   ⟸   XM_055097367
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054953344   ⟸   XM_055097369
- Peptide Label: isoform X10
Protein Domains
CARMIL C-terminal   CARMIL pleckstrin homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048202.1 UniProtKB/TrEMBL
  ENSPPAT00000048208.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARMIL_C UniProtKB/TrEMBL
  CARMIL_PH UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100970849 UniProtKB/TrEMBL
NCBI Gene CARMIL3 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT, ISOFORM F-RELATED UniProtKB/TrEMBL
  PTHR24112:SF43 UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A2R9B8H5_PANPA UniProtKB/TrEMBL
  A0A2R9BAR5 ENTREZGENE, UniProtKB/TrEMBL