LOC100989340 (E3 SUMO-protein ligase RanBP2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100989340 (E3 SUMO-protein ligase RanBP2) Pan paniscus
Analyze
Symbol: LOC100989340
Name: E3 SUMO-protein ligase RanBP2
RGD ID: 11818330
Description: ENCODES a protein that exhibits cyclosporin A binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN centrosome localization (ortholog); NLS-bearing protein import into nucleus (ortholog); nuclear export (ortholog); PARTICIPATES IN CRM1 export pathway; mitochondria transport pathway; ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); anodontia (ortholog); autism spectrum disorder (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasmic periphery of the nuclear pore complex (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100967338; RAN binding protein 2; RANBP2; ranBP2-like and GRIP domain-containing protein 3; uncharacterized LOC100967338
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,961,024 - 95,029,437 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,010,961 - 110,039,769 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100989340
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,961,024 - 95,029,437 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,010,961 - 110,039,769 (+)NCBIpanpan1.1PanPan1.1panPan2
RANBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,719,482 - 109,842,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,719,482 - 108,785,810 (+)EnsemblGRCh38hg38GRCh38
GRCh372109,335,938 - 109,402,265 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,702,369 - 108,768,699 (+)NCBINCBI36Build 36hg18NCBI36
Build 342108,794,454 - 108,859,768NCBI
Celera2103,645,916 - 103,712,243 (+)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2102,934,349 - 103,000,733 (+)NCBIHuRef
CHM1_12109,340,280 - 109,406,595 (+)NCBICHM1_1
T2T-CHM13v2.02109,180,084 - 110,303,989 (+)NCBIT2T-CHM13v2.0
Ranbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,282,674 - 58,329,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1058,282,742 - 58,330,178 (+)EnsemblGRCm39 Ensembl
GRCm381058,446,852 - 58,494,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,446,920 - 58,494,356 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,909,600 - 57,956,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,842,209 - 57,889,512 (+)NCBIMGSCv36mm8
Celera1059,184,895 - 59,203,874 (+)NCBICelera
Celera712,211,992 - 12,212,429 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.34NCBI
Ranbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,984,520 - 27,036,573 (+)NCBIGRCr8
mRatBN7.22026,442,156 - 26,493,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,442,217 - 26,493,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,444,577 - 27,495,869 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,830,924 - 26,882,082 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,578,942 - 27,630,203 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02028,027,054 - 28,076,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.02028,365,538 - 28,375,676 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,365,988 - 28,375,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,027,054 - 28,076,664 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,846,539 - 29,896,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02030,181,409 - 30,191,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,271,467 - 37,322,723 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2027,892,535 - 27,943,825 (+)NCBICelera
Cytogenetic Map20q11NCBI
Ranbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,180,544 - 12,249,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547012,180,426 - 12,247,737 (+)NCBIChiLan1.0ChiLan1.0
RANBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,088,175 - 35,181,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,088,872 - 35,181,129 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,010,394 - 35,103,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01035,940,061 - 36,033,454 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1035,940,082 - 36,033,437 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11035,669,581 - 35,762,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01035,952,703 - 36,045,859 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,144,312 - 36,238,211 (-)NCBIUU_Cfam_GSD_1.0
Ranbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,063,973 - 92,136,842 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936829261,129 - 332,999 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936829261,017 - 333,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100511376
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,531,359 - 47,601,495 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,531,362 - 47,601,328 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,693,982 - 49,735,050 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,250,986 - 12,318,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1412,251,007 - 12,319,735 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660807,392,456 - 7,462,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034952393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX774433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_055107461   ⟹   XP_054963436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBI
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBI
RefSeq Acc Id: XM_055107462   ⟹   XP_054963437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,850,004 - 20,915,591 (+)NCBI
NHGRI_mPanPan12A20,852,769 - 20,920,058 (+)NCBI
RefSeq Acc Id: XM_055107463   ⟹   XP_054963438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBI
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBI
RefSeq Acc Id: XM_055107464   ⟹   XP_054963439
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,850,010 - 20,915,591 (+)NCBI
NHGRI_mPanPan12A20,852,791 - 20,920,058 (+)NCBI
RefSeq Acc Id: XM_055107465   ⟹   XP_054963440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,849,954 - 20,915,591 (+)NCBI
NHGRI_mPanPan12A20,852,719 - 20,920,058 (+)NCBI
RefSeq Acc Id: XM_055107466   ⟹   XP_054963441
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,849,954 - 20,888,772 (+)NCBI
NHGRI_mPanPan12A20,852,719 - 20,891,537 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_054963440   ⟸   XM_055107465
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054963436   ⟸   XM_055107461
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054963438   ⟸   XM_055107463
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054963441   ⟸   XM_055107466
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054963437   ⟸   XM_055107462
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054963439   ⟸   XM_055107464
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
NCBI Gene RANBP2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100989340  E3 SUMO-protein ligase RanBP2  RANBP2  RAN binding protein 2  Symbol and/or name change 5135510 APPROVED
2020-06-11 RANBP2  RAN binding protein 2  LOC100967338  uncharacterized LOC100967338  Data merged from RGD:11690901 737654 PROVISIONAL