EDDM3A (epididymal protein 3A) - Rat Genome Database

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Gene: EDDM3A (epididymal protein 3A) Pan paniscus
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Symbol: EDDM3A
Name: epididymal protein 3A
RGD ID: 11782071
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epididymal secretory protein E3-alpha; LOC100994459
RGD Orthologs
Human
Rat
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,243,351 - 22,245,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,458,453 - 21,461,879 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,608,955 - 1,610,069 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,664,532 - 19,666,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,666,172 - 19,666,615 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
EDDM3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,243,351 - 22,245,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,458,453 - 21,461,879 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,608,955 - 1,610,069 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,664,532 - 19,666,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,666,172 - 19,666,615 (+)Ensemblpanpan1.1panPan2
EDDM3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,735,946 - 20,748,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,745,887 - 20,748,380 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,214,046 - 21,216,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,283,939 - 20,286,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 341420,283,938 - 20,286,379NCBI
Celera141,074,990 - 1,077,430 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,335,124 - 1,337,564 (+)NCBIHuRef
CHM1_11421,216,122 - 21,218,563 (+)NCBICHM1_1
T2T-CHM13v2.01414,933,058 - 14,945,493 (+)NCBIT2T-CHM13v2.0
LOC103693823
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,859,514 - 26,860,154 (-)NCBIGRCr8
mRatBN7.21524,385,585 - 24,386,643 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,386,192 - 24,386,623 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01528,049,431 - 28,052,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,050,975 - 28,051,406 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,920,677 - 31,922,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,148,357 - 27,151,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1524,702,791 - 24,705,526 (-)NCBICelera
Cytogenetic Map15p14NCBI
EDDM3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,252,538 - 21,253,661 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,252,790 - 21,253,233 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605925,177,205 - 25,180,028 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034937239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000000173   ⟹   ENSPPAP00000000066
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1419,666,172 - 19,666,615 (+)Ensembl
RefSeq Acc Id: XM_034937239   ⟹   XP_034793130
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21522,243,351 - 22,245,435 (+)NCBI
NHGRI_mPanPan11421,459,838 - 21,461,837 (+)NCBI
Mhudiblu_PPA_v0141,608,955 - 1,610,069 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034793130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000066.1
Reference Protein Sequences
RefSeq Acc Id: XP_034793130   ⟸   XM_034937239
RefSeq Acc Id: ENSPPAP00000000066   ⟸   ENSPPAT00000000173
Protein Domains
Ribonuclease A-domain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000000145 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000000173.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro EDDM3A/EDDM3B UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
NCBI Gene EDDM3A ENTREZGENE
PANTHER PTHR16788 UniProtKB/TrEMBL
  PTHR16788:SF4 UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
Superfamily-SCOP SSF54076 UniProtKB/TrEMBL
UniProt A0A2R8Z5Q0_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 EDDM3A  epididymal protein 3A  LOC100994459  epididymal secretory protein E3-alpha  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100994459  epididymal secretory protein E3-alpha  EDDM3A  epididymal protein 3A  Symbol and/or name change 5135510 APPROVED