LOC100970300 (interferon alpha-17-like) - Rat Genome Database

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Gene: LOC100970300 (interferon alpha-17-like) Pan paniscus
Analyze
Symbol: LOC100970300 (Ensembl: IFNA17)
Name: interferon alpha-17-like (Ensembl:interferon alpha 17)
RGD ID: 11770339
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); signal transduction (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,302,030 - 103,303,355 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,307,975 - 103,309,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0921,089,946 - 21,091,265 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,707,467 - 21,708,515 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,707,810 - 21,708,379 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000006189   ⟹   ENSPPAP00000001308
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl921,707,810 - 21,708,379 (-)Ensembl
RefSeq Acc Id: XM_003830671   ⟹   XP_003830719
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211103,302,030 - 103,303,355 (+)NCBI
NHGRI_mPanPan19103,307,975 - 103,309,300 (+)NCBI
Mhudiblu_PPA_v0921,089,946 - 21,091,265 (-)NCBI
PanPan1.1921,707,467 - 21,708,515 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830719 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001308.1
Reference Protein Sequences
RefSeq Acc Id: XP_003830719   ⟸   XM_003830671
- UniProtKB: A0A2R8Z8Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001308   ⟸   ENSPPAT00000006189


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000006189.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report pps:100970300 UniProtKB/TrEMBL
NCBI Gene LOC100970300 ENTREZGENE
PANTHER INTERFERON ALPHA-10-RELATED UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A2R8Z8Q0 ENTREZGENE, UniProtKB/TrEMBL