RREB1 (ras responsive element binding protein 1) - Rat Genome Database

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Gene: RREB1 (ras responsive element binding protein 1) Pan paniscus
Analyze
Symbol: RREB1
Name: ras responsive element binding protein 1
RGD ID: 11755835
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); microcephaly (ortholog); RASopathy (ortholog); FOUND IN fibrillar center (inferred); nuclear speck (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-responsive element-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2521,747,574 - 21,892,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v066,945,205 - 7,089,757 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.167,160,933 - 7,356,556 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl67,257,875 - 7,356,544 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RREB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2521,747,574 - 21,892,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v066,945,205 - 7,089,757 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.167,160,933 - 7,356,556 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl67,257,875 - 7,356,544 (+)Ensemblpanpan1.1panPan2
RREB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,107,743 - 7,251,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,107,597 - 7,251,980 (+)EnsemblGRCh38hg38GRCh38
GRCh3767,107,976 - 7,252,213 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,053,263 - 7,196,194 (+)NCBINCBI36Build 36hg18NCBI36
Build 3467,084,476 - 7,196,194NCBI
Celera68,337,583 - 8,481,974 (+)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef66,984,113 - 7,128,514 (+)NCBIHuRef
CHM1_167,109,932 - 7,254,330 (+)NCBICHM1_1
T2T-CHM13v2.066,977,349 - 7,121,600 (+)NCBIT2T-CHM13v2.0
Rreb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,962,362 - 38,135,981 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1337,962,376 - 38,135,981 (+)EnsemblGRCm39 Ensembl
GRCm381337,778,382 - 37,952,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1337,778,400 - 37,952,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371337,917,907 - 38,043,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361337,833,505 - 37,959,468 (+)NCBIMGSCv36mm8
Celera1338,946,939 - 39,073,602 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1317.7NCBI
Rreb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81727,082,217 - 27,208,061 (-)NCBIGRCr8
mRatBN7.21726,876,687 - 27,002,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,876,697 - 27,002,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1726,734,931 - 26,860,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,338,506 - 28,464,419 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,683,567 - 26,809,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,539,137 - 27,718,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,539,133 - 27,665,266 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01729,453,342 - 29,632,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41733,125,272 - 33,251,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11733,130,948 - 33,187,331 (-)NCBI
Celera1726,508,633 - 26,634,463 (-)NCBICelera
Cytogenetic Map17p12NCBI
Rreb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554656,570,522 - 6,636,934 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554656,572,593 - 6,757,423 (-)NCBIChiLan1.0ChiLan1.0
RREB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,120,505 - 7,255,290 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,120,472 - 7,255,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,123,955 - 7,258,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,202,128 - 7,337,072 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,190,064 - 7,334,484 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,055,626 - 7,190,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,082,329 - 7,217,217 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,414,770 - 8,549,540 (+)NCBIUU_Cfam_GSD_1.0
Rreb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,052,502 - 17,233,119 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365345,324,430 - 5,385,707 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365345,321,488 - 5,390,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RREB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.174,512,286 - 4,639,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.274,478,004 - 4,652,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RREB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,938,831 - 65,084,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,938,800 - 65,009,057 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660447,066,464 - 7,212,615 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rreb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,259,884 - 18,382,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475618,259,884 - 18,383,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050800   ⟹   ENSPPAP00000027957
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl67,257,875 - 7,356,544 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050806   ⟹   ENSPPAP00000027963
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl67,287,082 - 7,356,025 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050809   ⟹   ENSPPAP00000027966
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl67,287,082 - 7,353,561 (+)Ensembl
RefSeq Acc Id: XM_003819171   ⟹   XP_003819219
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,748,971 - 21,892,126 (+)NCBI
NHGRI_mPanPan1617,745,174 - 17,888,548 (+)NCBI
Mhudiblu_PPA_v066,946,351 - 7,087,782 (+)NCBI
PanPan1.167,213,483 - 7,356,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034961402   ⟹   XP_034817293
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,748,578 - 21,892,126 (+)NCBI
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBI
Mhudiblu_PPA_v066,946,049 - 7,087,782 (+)NCBI
RefSeq Acc Id: XM_034961403   ⟹   XP_034817294
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,748,557 - 21,892,126 (+)NCBI
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBI
Mhudiblu_PPA_v066,946,227 - 7,089,757 (+)NCBI
RefSeq Acc Id: XM_034961406   ⟹   XP_034817297
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,748,557 - 21,892,126 (+)NCBI
NHGRI_mPanPan1617,744,041 - 17,888,548 (+)NCBI
Mhudiblu_PPA_v066,946,227 - 7,089,745 (+)NCBI
RefSeq Acc Id: XM_055113160   ⟹   XP_054969135
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,779,895 - 21,892,126 (+)NCBI
NHGRI_mPanPan1617,776,348 - 17,888,548 (+)NCBI
RefSeq Acc Id: XM_063605137   ⟹   XP_063461207
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,747,574 - 21,892,126 (+)NCBI
RefSeq Acc Id: XR_010112377
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2521,748,557 - 21,892,126 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003819219   ⟸   XM_003819171
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034817293   ⟸   XM_034961402
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034817294   ⟸   XM_034961403
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034817297   ⟸   XM_034961406
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000027963   ⟸   ENSPPAT00000050806
RefSeq Acc Id: ENSPPAP00000027957   ⟸   ENSPPAT00000050800
RefSeq Acc Id: ENSPPAP00000027966   ⟸   ENSPPAT00000050809
RefSeq Acc Id: XP_054969135   ⟸   XM_055113160
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063461207   ⟸   XM_063605137
- Peptide Label: isoform X1
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037017 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050800.1 UniProtKB/TrEMBL
  ENSPPAT00000050806.1 UniProtKB/TrEMBL
  ENSPPAT00000050809.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100977023 UniProtKB/TrEMBL
NCBI Gene RREB1 ENTREZGENE
PANTHER RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
  RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BFI0_PANPA UniProtKB/TrEMBL
  A0A2R9BI52_PANPA UniProtKB/TrEMBL
  A0A2R9BMR9_PANPA UniProtKB/TrEMBL
  A1YG45_PANPA UniProtKB/TrEMBL
  A1YG46_PANPA UniProtKB/TrEMBL
  A1YG47_PANPA UniProtKB/TrEMBL