NDUFAF4 (NADH:ubiquinone oxidoreductase complex assembly factor 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NDUFAF4 (NADH:ubiquinone oxidoreductase complex assembly factor 4) Pan paniscus
Analyze
Symbol: NDUFAF4
Name: NADH:ubiquinone oxidoreductase complex assembly factor 4
RGD ID: 11741806
Description: INVOLVED IN NADH dehydrogenase complex assembly (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN cytosol (inferred); mitochondrial membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25116,929,208 - 116,937,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16114,807,384 - 114,815,971 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0694,723,579 - 94,732,163 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1698,609,631 - 98,618,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl698,609,110 - 98,619,089 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NDUFAF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25116,929,208 - 116,937,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16114,807,384 - 114,815,971 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0694,723,579 - 94,732,163 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1698,609,631 - 98,618,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl698,609,110 - 98,619,089 (-)Ensemblpanpan1.1panPan2
NDUFAF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38696,889,315 - 96,897,891 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl696,889,315 - 96,897,891 (-)EnsemblGRCh38hg38GRCh38
GRCh37697,337,191 - 97,345,767 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36697,445,609 - 97,452,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 34697,445,611 - 97,452,476NCBI
Celera697,979,234 - 97,987,815 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef694,771,407 - 94,779,988 (-)NCBIHuRef
CHM1_1697,599,200 - 97,607,781 (-)NCBICHM1_1
T2T-CHM13v2.0698,061,115 - 98,069,692 (-)NCBIT2T-CHM13v2.0
Ndufaf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39424,898,083 - 24,905,001 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl424,898,083 - 24,905,001 (+)EnsemblGRCm39 Ensembl
GRCm38424,898,083 - 24,905,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl424,898,083 - 24,905,001 (+)EnsemblGRCm38mm10GRCm38
MGSCv37424,825,230 - 24,832,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36424,988,731 - 24,995,631 (+)NCBIMGSCv36mm8
Celera424,633,450 - 24,640,391 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.52NCBI
Ndufaf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8543,401,795 - 43,406,967 (+)NCBIGRCr8
mRatBN7.2538,605,169 - 38,610,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl538,605,153 - 38,610,336 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx540,697,761 - 40,702,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0542,296,782 - 42,301,956 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0542,230,101 - 42,235,275 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0539,251,370 - 39,256,542 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl539,251,337 - 39,257,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0543,880,679 - 43,885,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4539,939,787 - 39,944,959 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1539,939,965 - 39,945,137 (+)NCBI
Celera537,540,312 - 37,545,484 (+)NCBICelera
Cytogenetic Map5q21NCBI
Ndufaf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541122,878,595 - 22,882,770 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541122,878,031 - 22,882,723 (-)NCBIChiLan1.0ChiLan1.0
NDUFAF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11255,311,482 - 55,319,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1255,313,148 - 55,320,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1255,131,013 - 55,139,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01256,127,251 - 56,135,653 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1256,127,264 - 56,136,149 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11255,463,438 - 55,471,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01255,323,995 - 55,332,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01255,572,343 - 55,580,773 (-)NCBIUU_Cfam_GSD_1.0
Ndufaf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494689,893,297 - 89,898,570 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936699829,422 - 834,723 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936699829,441 - 834,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,034,406 - 64,044,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,038,277 - 64,044,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2172,407,811 - 72,414,346 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11376,997,444 - 77,004,570 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1376,997,297 - 77,006,999 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604049,303,374 - 49,311,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248108,450,126 - 8,456,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248108,450,186 - 8,457,339 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003824369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000051082   ⟹   ENSPPAP00000028236
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl698,609,110 - 98,619,089 (-)Ensembl
RefSeq Acc Id: XM_003824369   ⟹   XP_003824417
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25116,929,208 - 116,937,796 (-)NCBI
NHGRI_mPanPan16114,807,384 - 114,815,971 (-)NCBI
Mhudiblu_PPA_v0694,723,579 - 94,732,163 (-)NCBI
PanPan1.1698,609,631 - 98,618,189 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824417 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028236
  ENSPPAP00000028236.1
Reference Protein Sequences
RefSeq Acc Id: XP_003824417   ⟸   XM_003824369
- UniProtKB: A0A2R9BNL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000028236   ⟸   ENSPPAT00000051082


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051082.1 UniProtKB/TrEMBL
InterPro NDUFAF4 UniProtKB/TrEMBL
KEGG Report pps:100993519 UniProtKB/TrEMBL
NCBI Gene NDUFAF4 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 4 UniProtKB/TrEMBL
  PTHR13338 UniProtKB/TrEMBL
Pfam UPF0240 UniProtKB/TrEMBL
UniProt A0A2R9BNL8 ENTREZGENE, UniProtKB/TrEMBL