PLS1 (plastin 1) - Rat Genome Database

Name: PLS1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PLS1 (plastin 1) Pan paniscus

Analyze

Symbol:

PLS1

Name:

plastin 1

RGD ID:

11741410

Description:

ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); calcium ion binding (inferred); INVOLVED IN microvillus assembly (ortholog); terminal web assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 76 (ortholog); genetic disease (ortholog); FOUND IN actin filament (inferred); actin filament bundle (inferred); brush border (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

plastin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLS1 (plastin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Pls1 (plastin 1 (I-isoform))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pls1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pls1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLS1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pls1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLS1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLS1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pls1 (plastin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	140,490,165 - 140,623,025 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	140,494,897 - 140,627,757 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	139,629,825 - 139,747,080 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	147,221,909 - 147,338,600 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	147,289,205 - 147,338,600 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness (ISO)

autosomal dominant nonsyndromic deafness 76 (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

Liver Neoplasms (ISO)

sensorineural hearing loss (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (IEA)

actin filament network formation (IEA)

auditory receptor cell stereocilium organization (IEA)

intestinal D-glucose absorption (IEA)

microvillus assembly (ISO)

positive regulation of multicellular organism growth (IEA)

positive regulation of protein localization to plasma membrane (IEA)

regulation of microvillus length (IEA)

terminal web assembly (IEA,ISO)

vestibular receptor cell stereocilium organization (IEA)

Cellular Component

actin filament (IEA)

actin filament bundle (IEA)

brush border (IEA)

cytoplasm (IEA)

cytosol (IEA)

plasma membrane (IEA)

stereocilium (IEA)

terminal web (IEA)

Molecular Function

actin binding (IEA)

actin filament binding (IEA)

calcium ion binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PLS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	140,490,165 - 140,623,025 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	140,494,897 - 140,627,757 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	139,629,825 - 139,747,080 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	147,221,909 - 147,338,600 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	147,289,205 - 147,338,600 (+)	Ensembl	panpan1.1		panPan2

PLS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	142,596,393 - 142,713,664 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	142,596,393 - 142,713,664 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	142,315,235 - 142,432,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	143,825,034 - 143,915,191 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	143,825,041 - 143,915,199	NCBI
Celera	3	140,738,741 - 140,856,000 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI
HuRef	3	139,687,922 - 139,805,221 (+)	NCBI		HuRef
CHM1_1	3	142,278,265 - 142,395,516 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	145,343,653 - 145,460,901 (+)	NCBI		T2T-CHM13v2.0

Pls1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	95,634,695 - 95,727,359 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	95,634,695 - 95,727,364 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	95,752,642 - 95,845,306 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	95,752,642 - 95,845,311 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	95,653,061 - 95,745,698 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	95,563,391 - 95,654,612 (-)	NCBI		MGSCv36	mm8
Celera	9	95,319,770 - 95,411,700 (-)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	50.22	NCBI

Pls1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	105,196,312 - 105,306,252 (-)	NCBI		GRCr8
mRatBN7.2	8	96,316,703 - 96,426,592 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	96,317,849 - 96,385,195 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	101,983,678 - 102,015,932 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	100,182,931 - 100,215,183 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	98,021,875 - 98,054,127 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	103,557,361 - 103,659,625 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	103,557,364 - 103,608,913 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	103,008,357 - 103,110,153 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	100,825,543 - 100,858,153 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	100,845,099 - 100,913,858 (-)	NCBI
Celera	8	95,763,631 - 95,795,453 (-)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

Pls1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955508	3,213,646 - 3,260,554 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955508	3,215,304 - 3,324,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	38,243,631 - 38,347,195 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	38,243,024 - 38,347,202 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	38,170,597 - 38,273,260 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	38,775,761 - 38,879,245 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	38,775,186 - 38,879,252 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	38,457,792 - 38,561,305 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	38,534,253 - 38,637,869 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	38,778,573 - 38,881,960 (+)	NCBI		UU_Cfam_GSD_1.0

Pls1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	77,466,080 - 77,583,189 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	4,205,844 - 4,323,120 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	4,205,871 - 4,323,121 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	83,308,007 - 83,434,128 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	83,307,692 - 83,434,133 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PLS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	47,919,807 - 48,031,158 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	47,919,823 - 48,003,805 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	20,854,232 - 20,965,494 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pls1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	19,163,783 - 19,302,222 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	19,164,360 - 19,302,369 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034957553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055110587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000062089 ⟹ ENSPPAP00000039180

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	147,289,205 - 147,338,600 (+)	Ensembl

RefSeq Acc Id:

XM_003826515 ⟹ XP_003826563

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,505,061 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,512,368 - 140,627,757 (+)	NCBI
Mhudiblu_PPA_v0	3	139,629,827 - 139,747,080 (+)	NCBI
PanPan1.1	3	147,221,909 - 147,338,600 (+)	NCBI

Sequence:

show sequence

ATGCGCAGTGGCGCGAGCGCAGCGGCTACGCGGGCGCGGAGAGGTAGCCGCAGAGTGGACCTGC
AGGTACTTGGATCTCCAGTGGGAGCTGCGCTCTCGAAGGCAGGACAGCGGTGGCGGCAGATATA
AAGACCTGAAGATAGTCTTTTCTGTCCAAAGATGGAAAACAGTACTACTACCATTTCTCGGGAG
GAGCTTGAAGAACTACAAGAGGCATTTAATAAAATAGATATTGACAATAGTGGGTATGTCAGTG
ACTATGAACTTCAAGACCTGTTTAAGGAAGCAAGCCTTCCTCTGCCTGGCTACAAGGTGCGCGA
GATTGTGGAGAAAATTCTATCAGTTGCTGACAGCAACAAAGATGGCAAAATCAGTTTTGAAGAG
TTTGTGTCACTAATGCAAGAATTAAAAAGCAAAGATATCAGCAAAACATTCCGAAAAATAATTA
ACAAGAGGGAAGGCATTACTGCTATTGGAGGAACTTCAACTATTTCCAGTGAGGGCACACAGCA
TTCTTATTCAGAGGAAGAAAAAGTGGCTTTTGTTAACTGGATAAACAAAGCCCTGGAGAATGAC
CCTGACTGTAAGCATCTTATACCCATGAATCCCAATGATGATAGTCTTTTCAAGTCACTTGCAG
ATGGCATCCTTCTTTGCAAAATGATCAACTTATCTGAACCAGATACAATTGATGAAAGAGCCAT
CAATAAGAAAAAGCTCACGCCATTCACTATTTCTGAAAATTTAAACCTAGCTCTGAATTCTGCC
TCAGCCATTGGTTGTACAGTGGTCAACATTGGTGCATCAGATCTCAAAGAAGGAAAACCTCACT
TGGTCTTGGGACTTCTCTGGCAGATCATCAAAGTTGGCCTTTTTGCTGATATTGAGATTTCCAG
GAATGAAGCTCTGATTGCATTGTTAAATGAAGGTGAGGAACTAGAGGAGCTGATGAAGCTTTCT
CCTGAGGAATTACTGCTGCGATGGGTGAACTACCATCTGACCAATGCAGGATGGCATACCATCA
GCAACTTCAGCCAAGACATTAAGGACTCGAGAGCCTATTTTCATCTGCTTAATCAGATTGCCCC
TAAAGGTGGGGAAGATGGACCTGCCATTGCCATTGACCTTTCAGGAATTAATGAGACAAATGAC
CTGAAGCGTGCTGGACTCATGCTTCAAGAAGCAGATAAACTGGGCTGCAAGCAGTTTGTTACTC
CTGCAGATGTGGTTTCAGGCAATCCTAAACTTAATTTAGCTTTTGTAGCTAATTTGTTTAACAC
ATACCCATGCCTGCACAAGCCGAATAATAATGACATCGATATGAATTTACTGGAAGGAGAGAGC
AAGGAAGAGAGAACATTTCGGAACTGGATGAATTCCTTGGGAGTCAACCCATACATTAATCATT
TGTACAGTGACCTTGCAGATGCTTTAGTGATCTTTCAGCTCTATGAGATGATCCGAGTGCCAGT
CAACTGGAGCCATGTCAACAAACCTCCTTATCCTGCCCTTGGAGGGAACATGAAGAAGATTGAA
AACTGTAACTATGCAGTGGAACTTGGGAAGAACAAGGCCAAATTCTCCTTGGTTGGCATTGCTG
GGCAGGACCTAAATGAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCTGATGAGAAG
GTACACATTGAATGTGTTATCGGATCTTGGAGAGGGTGAAAAAGTAAATGATGAAATTATAATT
AAATGGGTCAATCAGACTCTTAAAAGTGCAAACAAAAAGACTTCTATTTCCAGCTTCAAGGATA
AATCTATAAGCACAAGTTTACCTGTCCTAGATTTAATAGATGCCATTGCACCAAATGCAGTTCG
TCAAGAAATGATCAGGAGAGAAAACTTATCTGATGAGGACAAGCTGAACAATGCTAAATACGCC
ATTTCAGTTGCTCGAAAGATCGGTGCCCGGATATATGCATTACCTGATGACCTCGTAGAAGTGA
AACCAAAGATGGTTATGACGGTGTTTGCATGCTTAATGGGAAAAGGACTGAACAGAATAAAATA
ATCATTTCATATGATTTTCTGCCACATTAAACATATTGTATGCCTCACAGTTTACAGGATTCTG
AAATGTAGTGGGTGTAAAACCAGAGATTATTTGTATGCTCAAAATAGTTATATATTCATTAATG
AATTCAATATCCTGTTCATACTAGTTAGAGCTGGTCAGCCTTTTTGGGTAACACAGTTAATTTA
CCAACTGATACAGATAATAGAATATATTCATAATCAAGCTGATACTTCATGATTAAATTATTTT
TGTTGCTTAAAAGTCGTATTAGACAAGACTAAATCATTCTTTTTTATGGTTCAAAAAAGATGAA
TACAAACGTTTTTGCAGGTTCTGCTGTGAAATGTGGTTTGATTTTTTTGGTGTGTTAATTTTGA
TCATAAATGCATTCATACTCATAATCCAGTTTAATCCTTTTATTTGCTTCCTCCAACTATTTAA
AGTGGTCCAAAAACACTTTTCTGTAAGTTTCTATACTGTCTAAAACCTTATGGTGACCAGAATT
GTTTATTAATATCAAACTTTTTTATATATGAGAACTAATTCTTGAATAAACCCCAAAGTTCACT
CTCTTGTTTAAGTAGCAGCAGCTTTTTACTTAAAATTTAATTTTAACTACATTGATACTTTACA
TATCCTAGTTTGGTAACACAGCTTTAACTATGTCATGCAACATATATATGTTGGTAGGATGTTA
TTAGAGAGATATGTGTGCATATATATTTTTTTGCACCTGAATCACCCAGCTTTTCATAAGTGGT
ATGTTTAATTGGTCATTCAGCCAACCATCAGTATTTTCCCCCCACAACATGTGTAACACTTTTC
AGTCTGTGGATATCTGATACATTAAGATTTCTTTTTATAAGTATTCATTTTGAATGTGCATATA
GTTATTTGACCCCTTCCAAATACTTGTAGCCAAACATTGGCTAGAACATCCCAAGATATGCTGA
CACTGTCCTGTTAGCTTCATATTATACTTGCTAGTTTAGGTCTCTATAGAAGCCCTATATAATT
TAGAATATGCCCACTGAATATCTTTAATAGAAAGTAACATAAAGCTAGTATTCAATCTAGAGTA
TTTTCATATGTTTTTTCACAGCCCGTTACAAATTGGCAATGTTTGGTTAATGTTTGTATTACTT
GGAAATTGCTACAGCTTGGACTATTTTTTTCTAAATTTTTAGCATTAGTCCATTTCTGCTGCTA
ACAATTGAATCCAGAAATCTACTTTCTCCATCTTCCACTGTTAGTGCCAGTGAGCAATACTGTT
GTGCAACAAAAATGTCACTTTATCTCAGTGTCAATGAGTAGTCTAAATTCCCTTTCTACCATTG
ATTTAAATATATATATTGGTAAGAGAGACTGCCCATGTGTTTAGAATAGAATTTTTTAAATGAA
ATGATCAACAGGTGGAATTTGAAATATATTCTTCTACAAAAGAGATTTCTTTCCCTTTTATATT
TTGATGATTGTTTTCCTAAGATTAAGATATGTTCTTGCTCTTTTATAAGATTATTTAAATTATG
TTTCCCTCTGATTTTTTTTCACCATTGTATTTACTAAGTTATTGGATTTACATGAAATCTGGCA
CTTTAGGGTGTTCTTTTTCTCACAGAGTATATTTAATAAAAATGCTGTGTATATAGAAA

hide sequence

RefSeq Acc Id:

XM_034957552 ⟹ XP_034813443

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,505,059 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,512,368 - 140,627,757 (+)	NCBI
Mhudiblu_PPA_v0	3	139,629,826 - 139,745,468 (+)	NCBI

RefSeq Acc Id:

XM_034957553 ⟹ XP_034813444

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,505,057 - 140,617,020 (+)	NCBI
NHGRI_mPanPan1	3	140,512,368 - 140,621,034 (+)	NCBI
Mhudiblu_PPA_v0	3	139,629,825 - 139,738,745 (+)	NCBI

RefSeq Acc Id:

XM_055110580 ⟹ XP_054966555

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,505,058 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,512,373 - 140,627,757 (+)	NCBI

RefSeq Acc Id:

XM_055110581 ⟹ XP_054966556

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,490,169 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,494,901 - 140,627,757 (+)	NCBI

RefSeq Acc Id:

XM_055110582 ⟹ XP_054966557

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,505,060 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,512,373 - 140,627,757 (+)	NCBI

RefSeq Acc Id:

XM_055110584 ⟹ XP_054966559

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,490,165 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,494,897 - 140,627,757 (+)	NCBI

RefSeq Acc Id:

XM_055110586 ⟹ XP_054966561

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,567,839 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,572,571 - 140,627,757 (+)	NCBI

RefSeq Acc Id:

XM_055110587 ⟹ XP_054966562

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	140,530,263 - 140,623,025 (+)	NCBI
NHGRI_mPanPan1	3	140,535,067 - 140,627,757 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003826563	(Get FASTA)	NCBI Sequence Viewer
	XP_034813443	(Get FASTA)	NCBI Sequence Viewer
	XP_034813444	(Get FASTA)	NCBI Sequence Viewer
	XP_054966555	(Get FASTA)	NCBI Sequence Viewer
	XP_054966556	(Get FASTA)	NCBI Sequence Viewer
	XP_054966557	(Get FASTA)	NCBI Sequence Viewer
	XP_054966559	(Get FASTA)	NCBI Sequence Viewer
	XP_054966561	(Get FASTA)	NCBI Sequence Viewer
	XP_054966562	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000039180
	ENSPPAP00000039180.1

RefSeq Acc Id:	XP_003826563 ⟸ XM_003826515
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENSTTTISREELEELQEAFNKIDIDNSGYVSDYELQDLFKEASLPLPGYKVREIVEKILSVAD SNKDGKISFEEFVSLMQELKSKDISKTFRKIINKREGITAIGGTSTISSEGTQHSYSEEEKVAF VNWINKALENDPDCKHLIPMNPNDDSLFKSLADGILLCKMINLSEPDTIDERAINKKKLTPFTI SENLNLALNSASAIGCTVVNIGASDLKEGKPHLVLGLLWQIIKVGLFADIEISRNEALIALLNE GEELEELMKLSPEELLLRWVNYHLTNAGWHTISNFSQDIKDSRAYFHLLNQIAPKGGEDGPAIA IDLSGINETNDLKRAGLMLQEADKLGCKQFVTPADVVSGNPKLNLAFVANLFNTYPCLHKPNNN DIDMNLLEGESKEERTFRNWMNSLGVNPYINHLYSDLADALVIFQLYEMIRVPVNWSHVNKPPY PALGGNMKKIENCNYAVELGKNKAKFSLVGIAGQDLNEGNSTLTLALVWQLMRRYTLNVLSDLG EGEKVNDEIIIKWVNQTLKSANKKTSISSFKDKSISTSLPVLDLIDAIAPNAVRQEMIRRENLS DEDKLNNAKYAISVARKIGARIYALPDDLVEVKPKMVMTVFACLMGKGLNRIK hide sequence

RefSeq Acc Id:	XP_034813444 ⟸ XM_034957553
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034813443 ⟸ XM_034957552
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSPPAP00000039180 ⟸ ENSPPAT00000062089

RefSeq Acc Id:	XP_054966559 ⟸ XM_055110584
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054966556 ⟸ XM_055110581
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054966555 ⟸ XM_055110580
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054966557 ⟸ XM_055110582
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054966562 ⟸ XM_055110587
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054966561 ⟸ XM_055110586
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CB66 (UniProtKB/TrEMBL)

Protein Domains

Calponin-homology (CH) EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000042289	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000062089.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	Actinin_actin-bd_CS	UniProtKB/TrEMBL
	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Fimbrin/Plastin	UniProtKB/TrEMBL
KEGG Report	pps:100974055	UniProtKB/TrEMBL
NCBI Gene	PLS1	ENTREZGENE
PANTHER	PTHR19961	UniProtKB/TrEMBL
	PTHR19961:SF27	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	PF00307	UniProtKB/TrEMBL
PROSITE	ACTININ_1	UniProtKB/TrEMBL
	ACTININ_2	UniProtKB/TrEMBL
	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	PS50021	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
	SSF47576	UniProtKB/TrEMBL
UniProt	A0A2R9CB66	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations