TPBG (trophoblast glycoprotein) - Rat Genome Database

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Gene: TPBG (trophoblast glycoprotein) Pan paniscus
Analyze
Symbol: TPBG
Name: trophoblast glycoprotein
RGD ID: 11736255
Description: INVOLVED IN cell chemotaxis (ortholog); dendrite arborization (ortholog); mesenchymal cell migration (ortholog); ASSOCIATED WITH immunodeficiency 23 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN axon terminus (inferred); cytoplasm (inferred); dendrite (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25102,464,594 - 102,473,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16100,349,222 - 100,353,825 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0680,265,172 - 80,273,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1683,530,184 - 83,536,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl683,530,571 - 83,531,915 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TPBG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25102,464,594 - 102,473,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16100,349,222 - 100,353,825 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0680,265,172 - 80,273,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1683,530,184 - 83,536,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl683,530,571 - 83,531,915 (+)Ensemblpanpan1.1panPan2
TPBG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38682,362,983 - 82,367,420 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl682,363,206 - 82,367,420 (+)EnsemblGRCh38hg38GRCh38
GRCh37683,072,700 - 83,077,137 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,130,258 - 83,133,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 34683,130,257 - 83,133,333NCBI
Celera683,506,010 - 83,510,221 (+)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef680,300,641 - 80,304,852 (+)NCBIHuRef
CHM1_1683,170,653 - 83,174,864 (+)NCBICHM1_1
T2T-CHM13v2.0683,582,429 - 83,586,866 (+)NCBIT2T-CHM13v2.0
Tpbg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39985,724,433 - 85,729,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl985,724,433 - 85,729,093 (+)EnsemblGRCm39 Ensembl
GRCm38985,842,380 - 85,847,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl985,842,380 - 85,847,040 (+)EnsemblGRCm38mm10GRCm38
MGSCv37985,735,987 - 85,740,662 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36985,639,128 - 85,642,507 (+)NCBIMGSCv36mm8
Celera982,936,659 - 82,941,333 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.4NCBI
Tpbg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8895,673,993 - 95,677,364 (+)NCBIGRCr8
mRatBN7.2886,793,953 - 86,797,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl886,793,749 - 86,797,741 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx892,462,281 - 92,465,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0890,661,732 - 90,665,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0888,505,828 - 88,509,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0893,491,761 - 93,495,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl893,491,761 - 93,495,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,006,542 - 93,009,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,075,960 - 91,079,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,095,414 - 91,098,784 (+)NCBI
Celera886,406,590 - 86,409,959 (+)NCBICelera
Cytogenetic Map8q31NCBI
Tpbg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541110,203,144 - 10,206,711 (+)NCBIChiLan1.0ChiLan1.0
TPBG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11242,872,289 - 42,878,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1242,871,239 - 42,875,151 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1242,750,516 - 42,753,814 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01243,640,373 - 43,643,675 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11242,958,895 - 42,962,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01242,928,419 - 42,931,719 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01243,083,154 - 43,086,460 (+)NCBIUU_Cfam_GSD_1.0
Tpbg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,192,165 - 78,195,794 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365108,275,660 - 8,278,367 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365108,274,760 - 8,278,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPBG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,847,819 - 83,850,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1183,847,809 - 83,851,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2194,386,257 - 94,388,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPBG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,047,658 - 7,051,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,049,415 - 7,050,680 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040183,264,600 - 183,268,868 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpbg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479912,226,350 - 12,230,701 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479912,226,350 - 12,325,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000000717   ⟹   ENSPPAP00000000177
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl683,530,571 - 83,531,915 (+)Ensembl
RefSeq Acc Id: XM_034962432   ⟹   XP_034818323
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25102,464,594 - 102,473,670 (+)NCBI
NHGRI_mPanPan16100,349,222 - 100,353,825 (+)NCBI
Mhudiblu_PPA_v0680,265,172 - 80,273,022 (+)NCBI
RefSeq Acc Id: XM_034962433   ⟹   XP_034818324
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25102,470,702 - 102,473,670 (+)NCBI
NHGRI_mPanPan16100,350,867 - 100,353,825 (+)NCBI
Mhudiblu_PPA_v0680,266,175 - 80,273,022 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034818323 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000177.1
Reference Protein Sequences
RefSeq Acc Id: XP_034818323   ⟸   XM_034962432
- UniProtKB: A0A2R8Z5Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034818324   ⟸   XM_034962433
- UniProtKB: A0A2R8Z5Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000000177   ⟸   ENSPPAT00000000717
Protein Domains
LRRCT   LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000000668 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000000717.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene TPBG ENTREZGENE
PANTHER LP06937P UniProtKB/TrEMBL
  TROPHOBLAST GLYCOPROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PRINTS LEURICHRPT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A2R8Z5Y9 ENTREZGENE, UniProtKB/TrEMBL