CLEC1B (C-type lectin domain family 1 member B) - Rat Genome Database

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Gene: CLEC1B (C-type lectin domain family 1 member B) Pan paniscus
Analyze
Symbol: CLEC1B
Name: C-type lectin domain family 1 member B
RGD ID: 11735682
Description: ENCODES a protein that exhibits transmembrane signaling receptor activity (inferred); INVOLVED IN platelet formation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103783463; uncharacterized LOC103783463; uncharacterized protein LOC103783463
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,480,625 - 15,518,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,476,162 - 15,515,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,037,928 - 10,045,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,286,839 - 10,294,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,286,838 - 10,293,153 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLEC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,480,625 - 15,518,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,476,162 - 15,515,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,037,928 - 10,045,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,286,839 - 10,294,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,286,838 - 10,293,153 (-)Ensemblpanpan1.1panPan2
CLEC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38129,993,075 - 10,001,899 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl129,985,642 - 10,013,424 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,145,674 - 10,154,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,036,927 - 10,043,166 (-)NCBINCBI36Build 36hg18NCBI36
Build 341210,036,930 - 10,043,146NCBI
Celera1215,307,033 - 15,313,278 (-)NCBICelera
Cytogenetic Map12p13.31-p13.2NCBI
HuRef129,888,528 - 9,894,776 (-)NCBIHuRef
CHM1_11210,114,968 - 10,121,213 (-)NCBICHM1_1
T2T-CHM13v2.0129,879,239 - 9,888,052 (-)NCBIT2T-CHM13v2.0
Clec1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,374,260 - 129,382,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,374,260 - 129,386,298 (+)EnsemblGRCm39 Ensembl
GRCm386129,397,297 - 129,405,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,397,297 - 129,409,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv376129,347,315 - 129,355,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,362,990 - 129,371,026 (+)NCBIMGSCv36mm8
Celera6131,119,212 - 131,127,252 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.3NCBI
Clec1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,533,987 - 164,542,320 (+)NCBIGRCr8
mRatBN7.24162,847,978 - 162,856,291 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,848,010 - 162,856,291 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,082,898 - 169,091,109 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04164,865,854 - 164,874,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,499,904 - 163,508,115 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,161,941 - 163,170,470 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,162,211 - 163,170,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,806,153 - 211,814,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,671,432 - 166,679,641 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4151,533,490 - 151,541,701 (+)NCBICelera
Cytogenetic Map4q42NCBI
Clec1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554137,812,552 - 7,819,060 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554137,812,750 - 7,821,620 (-)NCBIChiLan1.0ChiLan1.0
Clec1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,372,532 - 97,378,800 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936902504,095 - 510,261 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936902504,095 - 510,261 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,889,930 - 61,946,340 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,889,874 - 61,896,964 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,722,282 - 64,804,288 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLEC1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,869,686 - 9,875,998 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,869,768 - 9,875,707 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660891,942,133 - 1,950,481 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000042146   ⟹   ENSPPAP00000019385
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1210,286,838 - 10,293,153 (-)Ensembl
RefSeq Acc Id: XM_008954996   ⟹   XP_008953244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21015,480,625 - 15,516,096 (-)NCBI
NHGRI_mPanPan11215,476,166 - 15,512,854 (-)NCBI
Mhudiblu_PPA_v01210,037,928 - 10,045,945 (-)NCBI
PanPan1.11210,286,839 - 10,294,639 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055095377   ⟹   XP_054951352
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21015,480,625 - 15,518,618 (-)NCBI
NHGRI_mPanPan11215,476,162 - 15,515,376 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008953244 (Get FASTA)   NCBI Sequence Viewer  
  XP_054951352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019385
  ENSPPAP00000019385.1
Reference Protein Sequences
RefSeq Acc Id: XP_008953244   ⟸   XM_008954996
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AUE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000019385   ⟸   ENSPPAT00000042146
RefSeq Acc Id: XP_054951352   ⟸   XM_055095377
- Peptide Label: isoform X2
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032879 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042146.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/TrEMBL
KEGG Report pps:100967753 UniProtKB/TrEMBL
NCBI Gene CLEC1B ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN FAMILY 1 MEMBER B UniProtKB/TrEMBL
  C-TYPE LECTIN DOMAIN FAMILY 12 MEMBER A-RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R9AUE4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 CLEC1B  C-type lectin domain family 1 member B  LOC103783463  uncharacterized LOC103783463  Data merged from RGD:11855142 737654 PROVISIONAL