INCA1 (inhibitor of CDK, cyclin A1 interacting protein 1) - Rat Genome Database

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Gene: INCA1 (inhibitor of CDK, cyclin A1 interacting protein 1) Pan paniscus
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Symbol: INCA1
Name: inhibitor of CDK, cyclin A1 interacting protein 1
RGD ID: 11733039
Description: ENCODES a protein that exhibits cyclin binding (inferred); cyclin-dependent protein serine/threonine kinase inhibitor activity (inferred); identical protein binding (inferred); INVOLVED IN apoptotic signaling pathway (ortholog); fibroblast proliferation (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH congenital myasthenic syndrome 4A (ortholog); spastic ataxia 2 (ortholog); FOUND IN cytoplasm (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,598,533 - 12,608,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,566,903 - 14,576,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,036,659 - 5,046,146 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,024,740 - 5,034,865 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,024,740 - 5,034,216 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nuclear body  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
INCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,598,533 - 12,608,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,566,903 - 14,576,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,036,659 - 5,046,146 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,024,740 - 5,034,865 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,024,740 - 5,034,216 (-)Ensemblpanpan1.1panPan2
INCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,988,130 - 4,997,522 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,988,130 - 4,997,610 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,891,425 - 4,900,817 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,832,149 - 4,841,629 (-)NCBINCBI36Build 36hg18NCBI36
Celera174,906,240 - 4,915,716 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,779,268 - 4,788,785 (-)NCBIHuRef
CHM1_1174,900,742 - 4,910,219 (-)NCBICHM1_1
T2T-CHM13v2.0174,878,461 - 4,887,846 (-)NCBIT2T-CHM13v2.0
Inca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,579,187 - 70,593,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,579,187 - 70,590,981 (-)EnsemblGRCm39 Ensembl
GRCm381170,688,361 - 70,700,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,688,361 - 70,700,155 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,501,863 - 70,513,657 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,504,556 - 70,516,350 (-)NCBIMGSCv36mm8
Celera1178,239,300 - 78,251,079 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Inca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,900,610 - 55,912,975 (-)NCBIGRCr8
mRatBN7.21055,401,989 - 55,414,364 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,401,982 - 55,414,114 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,082,533 - 60,094,590 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,571,040 - 59,583,102 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,070,147 - 55,082,203 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,309,722 - 57,322,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,309,972 - 57,317,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,055,316 - 57,067,636 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,568,057 - 57,576,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,581,679 - 57,593,860 (-)NCBI
Celera1054,547,537 - 54,559,512 (-)NCBICelera
Cytogenetic Map10q24NCBI
Inca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,392,219 - 10,397,168 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,391,957 - 10,397,212 (-)NCBIChiLan1.0ChiLan1.0
INCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,639,263 - 31,642,663 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,639,189 - 31,642,914 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,774,377 - 31,781,043 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,739,772 - 31,746,451 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,740,935 - 31,746,360 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,706,336 - 31,712,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,666,059 - 31,672,713 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,842,403 - 31,849,078 (+)NCBIUU_Cfam_GSD_1.0
Inca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,170,577 - 53,181,034 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,721,443 - 2,730,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,721,451 - 2,730,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,924,902 - 51,931,873 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,923,764 - 51,931,875 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,993,116 - 54,000,569 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INCA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,469,067 - 4,476,337 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,468,469 - 4,472,886 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,155,941 - 17,163,133 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Inca1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,837,287 - 8,844,959 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,837,135 - 8,845,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000054614   ⟹   ENSPPAP00000031749
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl175,024,740 - 5,034,216 (-)Ensembl
RefSeq Acc Id: XM_008962529   ⟹   XP_008960777
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,598,533 - 12,608,303 (-)NCBI
NHGRI_mPanPan11714,566,903 - 14,576,591 (-)NCBI
Mhudiblu_PPA_v0175,036,748 - 5,045,506 (-)NCBI
PanPan1.1175,024,740 - 5,034,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008962530   ⟹   XP_008960778
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,598,533 - 12,608,329 (-)NCBI
NHGRI_mPanPan11714,566,903 - 14,576,699 (-)NCBI
Mhudiblu_PPA_v0175,036,748 - 5,046,146 (-)NCBI
PanPan1.1175,024,740 - 5,034,865 (-)NCBI
Sequence:
RefSeq Acc Id: XM_057300324   ⟹   XP_057156307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,598,807 - 12,608,303 (-)NCBI
NHGRI_mPanPan11714,566,992 - 14,576,591 (-)NCBI
RefSeq Acc Id: XM_057300325   ⟹   XP_057156308
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21912,598,807 - 12,607,903 (-)NCBI
NHGRI_mPanPan11714,566,992 - 14,576,276 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008960777 (Get FASTA)   NCBI Sequence Viewer  
  XP_008960778 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156307 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031749
  ENSPPAP00000031749.1
RefSeq Acc Id: XP_008960778   ⟸   XM_008962530
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BTH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008960777   ⟸   XM_008962529
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BTH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000031749   ⟸   ENSPPAT00000054614
RefSeq Acc Id: XP_057156307   ⟸   XM_057300324
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057156308   ⟸   XM_057300325
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BTH7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038786 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054614.1 UniProtKB/TrEMBL
InterPro INCA1 UniProtKB/TrEMBL
KEGG Report pps:100982603 UniProtKB/TrEMBL
NCBI Gene INCA1 ENTREZGENE
PANTHER PROTEIN INCA1 UniProtKB/TrEMBL
  PTHR37341 UniProtKB/TrEMBL
Pfam INCA1 UniProtKB/TrEMBL
PRINTS PROTEININCA1 UniProtKB/TrEMBL
UniProt A0A2R9BTH7 ENTREZGENE, UniProtKB/TrEMBL