B3GALT5 (beta-1,3-galactosyltransferase 5) - Rat Genome Database

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Gene: B3GALT5 (beta-1,3-galactosyltransferase 5) Pan paniscus
Analyze
Symbol: B3GALT5
Name: beta-1,3-galactosyltransferase 5
RGD ID: 11730262
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity (inferred); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pancreatic cancer (ortholog); FOUND IN endomembrane system (inferred); endoplasmic reticulum (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: b3Gal-T5; Beta-1,3-GalTase 5; Beta-3-Gx-T5; beta1,3-GalT 5; Beta3Gal-T5; Beta3GalT5; UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase 5; UDP-Gal:GlcNAc beta1,3-galactosyltransferase 5; UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,710,822 - 35,771,737 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,566,931 - 30,627,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02125,909,993 - 26,027,130 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,304,059 - 39,351,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2139,346,707 - 39,350,305 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,710,822 - 35,771,737 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,566,931 - 30,627,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02125,909,993 - 26,027,130 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,304,059 - 39,351,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2139,346,707 - 39,350,305 (+)Ensemblpanpan1.1panPan2
B3GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,612,940 - 39,673,137 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,556,442 - 39,673,137 (+)EnsemblGRCh38hg38GRCh38
GRCh372140,984,867 - 41,045,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362139,951,124 - 39,956,685 (+)NCBINCBI36Build 36hg18NCBI36
Build 342139,951,123 - 39,956,685NCBI
Celera2126,226,688 - 26,232,244 (+)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,454,204 - 26,504,098 (+)NCBIHuRef
CHM1_12140,545,618 - 40,595,561 (+)NCBICHM1_1
T2T-CHM13v2.02137,997,410 - 38,057,589 (+)NCBIT2T-CHM13v2.0
B3galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391696,037,001 - 96,121,059 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1696,037,001 - 96,121,059 (+)EnsemblGRCm39 Ensembl
GRCm381696,235,801 - 96,319,859 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,235,801 - 96,319,859 (+)EnsemblGRCm38mm10GRCm38
MGSCv371696,457,408 - 96,541,465 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361696,385,942 - 96,424,767 (+)NCBIMGSCv36mm8
Celera1697,308,806 - 97,394,295 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1656.88NCBI
B3galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81149,053,959 - 49,100,398 (+)NCBIGRCr8
mRatBN7.21135,584,273 - 35,630,922 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,585,220 - 35,630,917 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1144,281,873 - 44,287,919 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,953,251 - 36,959,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,099,044 - 36,105,247 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,638,067 - 36,683,915 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,634,662 - 36,683,672 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01140,163,670 - 40,211,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41136,580,436 - 36,641,598 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11136,673,191 - 36,695,438 (+)NCBI
Celera1132,839,913 - 32,846,116 (-)NCBICelera
Cytogenetic Map11q11NCBI
B3galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,343,581 - 38,393,408 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540738,343,581 - 38,393,408 (+)NCBIChiLan1.0ChiLan1.0
B3GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13134,338,025 - 34,376,080 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3134,369,298 - 34,373,204 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3133,614,794 - 33,653,109 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03133,849,103 - 33,887,450 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3133,849,050 - 33,887,438 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13133,720,578 - 33,758,851 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03133,725,701 - 33,764,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03134,217,340 - 34,255,787 (+)NCBIUU_Cfam_GSD_1.0
B3galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497133,767,465 - 33,857,029 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365003,619,216 - 3,620,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365003,613,910 - 3,621,119 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113203,208,353 - 203,250,085 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,579,705 - 213,584,066 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1283,561,817 - 83,606,342 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl283,603,946 - 83,604,881 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605411,363,234 - 11,466,464 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474524,390,015 - 24,450,705 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056743   ⟹   ENSPPAP00000033863
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2139,346,707 - 39,350,305 (+)Ensembl
RefSeq Acc Id: XM_055105290   ⟹   XP_054961265
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22235,710,822 - 35,771,737 (+)NCBI
NHGRI_mPanPan12130,566,931 - 30,627,785 (+)NCBI
RefSeq Acc Id: XM_055105291   ⟹   XP_054961266
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22235,710,822 - 35,771,737 (+)NCBI
NHGRI_mPanPan12130,566,931 - 30,627,785 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054961265 (Get FASTA)   NCBI Sequence Viewer  
  XP_054961266 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA94500 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033863.1
GenBank Protein Q9N294 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000033863   ⟸   ENSPPAT00000056743
RefSeq Acc Id: XP_054961265   ⟸   XM_055105290
- UniProtKB: A0A2R9BW11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054961266   ⟸   XM_055105291
- UniProtKB: A0A2R9BW11 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039797 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056743.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene B3GALT5 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11214 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R9BW11 ENTREZGENE, UniProtKB/TrEMBL
  B3GT5_PANPA UniProtKB/Swiss-Prot, ENTREZGENE