LOC100985683 (cytochrome b-c1 complex subunit 7)

Gene: LOC100985683 (cytochrome b-c1 complex subunit 7) Pan paniscus

Analyze

Symbol:

LOC100985683 (Ensembl: UQCRB)

Name:

cytochrome b-c1 complex subunit 7 (Ensembl:ubiquinol-cytochrome c reductase binding protein)

RGD ID:

11729416

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (inferred); ASSOCIATED WITH depressive disorder (ortholog); inherited metabolic disorder (ortholog); Klippel-Feil syndrome 1 (ortholog); FOUND IN mitochondrial respiratory chain complex III (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	113,563,347 - 113,568,015 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	89,102,298 - 89,106,936 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	92,856,055 - 92,860,697 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	95,053,173 - 95,058,311 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	95,053,170 - 95,058,311 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

depressive disorder (ISO)

inherited metabolic disorder (ISO)

Klippel-Feil syndrome 1 (ISO)

mitochondrial complex III deficiency nuclear type 1 (ISO)

mitochondrial complex III deficiency nuclear type 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial electron transport, ubiquinol to cytochrome c (IEA)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrial respiratory chain complex III (IEA,ISO)

mitochondrion (IEA)

respirasome (IEA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100985683
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	113,563,347 - 113,568,015 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	89,102,298 - 89,106,936 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	92,856,055 - 92,860,697 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	95,053,173 - 95,058,311 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	95,053,170 - 95,058,311 (-)	Ensembl	panpan1.1		panPan2

UQCRB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	96,222,947 - 96,235,545 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	96,222,947 - 96,235,546 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	97,235,175 - 97,247,773 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	97,311,910 - 97,316,987 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	97,311,910 - 97,316,987	NCBI
Celera	8	93,425,296 - 93,433,854 (-)	NCBI		Celera
Cytogenetic Map	8	q22.1	NCBI
HuRef	8	92,444,462 - 92,453,413 (-)	NCBI		HuRef
CHM1_1	8	97,279,143 - 97,288,101 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	97,348,283 - 97,360,880 (-)	NCBI		T2T-CHM13v2.0

Uqcrb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	67,048,640 - 67,053,414 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	67,048,681 - 67,053,442 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	66,900,576 - 66,905,350 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	66,900,617 - 66,905,378 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	67,001,557 - 67,006,286 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	67,336,370 - 67,341,099 (-)	NCBI		MGSCv36	mm8
Celera	13	70,399,407 - 70,404,153 (+)	NCBI		Celera
Cytogenetic Map	13	B3	NCBI
cM Map	13	34.54	NCBI

Uqcrb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	65,700,016 - 65,705,382 (-)	NCBI		GRCr8
mRatBN7.2	7	63,814,784 - 63,820,150 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	63,814,797 - 63,820,150 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	65,703,995 - 65,709,361 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	67,906,281 - 67,911,647 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	67,698,929 - 67,704,291 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	71,264,501 - 71,269,869 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	71,264,514 - 71,269,869 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	94,718,402 - 94,718,876 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	71,436,501 - 71,441,869 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	67,958,363 - 67,963,730 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	67,979,647 - 67,984,492 (-)	NCBI
Celera	7	60,947,446 - 60,952,812 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

LOC102014666
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	12,229,317 - 12,232,944 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	12,225,505 - 12,232,944 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC119866751
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ROS_Cfam_1.0	29	40,934,060 - 40,939,720 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	29	40,977,344 - 40,982,559 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	40,946,437 - 40,951,665 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	41,409,574 - 41,414,443 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101976290
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	38,874,448 - 38,883,247 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	46,300,613 - 46,305,016 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	46,300,547 - 46,305,016 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UQCRB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	40,403,109 - 40,409,057 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	40,403,272 - 40,409,080 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	43,631,687 - 43,645,603 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103237165
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	91,194,628 - 91,199,264 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	91,194,625 - 91,199,219 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	49,588,303 - 49,596,837 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101707358
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	3,550,959 - 3,555,346 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	3,550,916 - 3,555,430 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003821678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000032512 ⟹ ENSPPAP00000009865

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	95,053,170 - 95,058,311 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000032517 ⟹ ENSPPAP00000009870

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	95,054,217 - 95,054,599 (-)	Ensembl

RefSeq Acc Id:

XM_003821678 ⟹ XP_003821726

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	113,563,347 - 113,568,015 (-)	NCBI
NHGRI_mPanPan1	8	89,102,298 - 89,106,936 (-)	NCBI
Mhudiblu_PPA_v0	8	92,856,055 - 92,860,697 (-)	NCBI
PanPan1.1	8	95,053,173 - 95,058,311 (-)	NCBI

Sequence:

show sequence

AGCGGCCTTTCTCTGTTCGCGATGTGACGTAACGCGCCTGCGGACTGGGCCCAGCTTGTCCTCT
ATGACTTACCCAGAAGGCAACGCTTCTCTTTCTGGTCAAAATGGCTGGCAAGCAGGCTGTTTCA
GCATCAGGCAAGTGGCTGGATGGTATTCGAAAATGGTATTACAATGCTGCAGGATTCAATAAAC
TGGGGTTAATGCGAGATGATACAATATACGAGGATGAAGATGTAAAAGAAGCCATAAGAAGGCT
TCCTGAGAACCTTTATAATGACAGGATGTTTCGCATTAAGAGGGCACTGGACCTGAACTTGAAG
CATCAGATCTTGCCTAAAGAGCAGTGGACCAAATATGAAGAGGAAAATTTCTACCTTGAACCGT
ATCTGAAAGAGGTTATTCGGGAAAGAAAAGAAAGAGAAGAATGGGCAAAGAAGTAATCATGTAG
TTGAAGTCTGTGGATGCAGCTGTTATGAAGATGGTTAAACTTGAAACAAACAATTTTAAGAATT
ATTTGGTCTGCAGATGTTTTACTTTAAATAAATGTCTATTGTAATGGCTGGAGTTTTTGAATTC
CAAACCTTATACTGAATAACTACTGAATCCCTTTACTGTTAAATTTTTTTCCAAACTTTCAAGA
TATATTTAGTTGTGTTTAACTGCTACTTGGAGCTCAGAAACCACTTTATCAGTTTTCCTCACTG
GTTGGGTAGCCTATCAGTTTATGGAAGGATATAACTTCCGTAAGTTACATCCTTATGGAAGCTA
CTGAATAAAAGAAGGGGGTATGCACCCCCTAGTTTGCCAAGATTGAGAAATAGCCTCTTCACTG
CTATGCAAACAGATTTGATTTTGCATCCTATCATTTAAAAAGAAATTATGTATGCACCCCAACA
TAGGCATACTTAAGTAATATATATACTCCTATGCTAACATGTAGACTAGAAAACAAAAAGACGT
TAGAAAAATAAAAGTATAAAGACAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003821726	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000009865
	ENSPPAP00000009865.1
	ENSPPAP00000009870.1
	ENSPPAP00000014905.1

RefSeq Acc Id:	XP_003821726 ⟸ XM_003821678
- UniProtKB:	A0A2R8ZY13 (UniProtKB/TrEMBL), A0A2R9ACA9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFRIK RALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK hide sequence

RefSeq Acc Id:

ENSPPAP00000009870 ⟸ ENSPPAT00000032517

RefSeq Acc Id:

ENSPPAP00000009865 ⟸ ENSPPAT00000032512

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028159	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSPPAG00000030618	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000032512.1	UniProtKB/TrEMBL
	ENSPPAT00000032517.1	UniProtKB/TrEMBL
	ENSPPAT00000037593.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1090.10	UniProtKB/TrEMBL
InterPro	QCR7	UniProtKB/TrEMBL
	QCR7_sf	UniProtKB/TrEMBL
KEGG Report	pps:100985683	UniProtKB/TrEMBL
NCBI Gene	LOC100985683	ENTREZGENE
PANTHER	CYTOCHROME B-C1 COMPLEX SUBUNIT 7	UniProtKB/TrEMBL
	CYTOCHROME B-C1 COMPLEX SUBUNIT 7	UniProtKB/TrEMBL
	PTHR12022	UniProtKB/TrEMBL
Pfam	UCR_14kD	UniProtKB/TrEMBL
PIRSF	Bc1_14K	UniProtKB/TrEMBL
Superfamily-SCOP	SSF81524	UniProtKB/TrEMBL
UniProt	A0A2R8ZY13	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZY16_PANPA	UniProtKB/TrEMBL
	A0A2R9ACA9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM