LOC100977156 (zinc finger protein 816) - Rat Genome Database

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Gene: LOC100977156 (zinc finger protein 816) Pan paniscus
Analyze
Symbol: LOC100977156
Name: zinc finger protein 816
RGD ID: 11727047
Description: ASSOCIATED WITH genetic disease (ortholog); psoriasis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZNF816
RGD Orthologs
Human
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22058,995,399 - 59,067,558 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11960,911,652 - 60,986,005 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01949,888,155 - 49,960,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,760,189 - 58,773,655 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100977156
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22058,995,399 - 59,067,558 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11960,911,652 - 60,986,005 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01949,888,155 - 49,960,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,760,189 - 58,773,655 (-)NCBIpanpan1.1PanPan1.1panPan2
ZNF816
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381952,949,385 - 52,962,881 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1952,949,379 - 52,962,911 (-)EnsemblGRCh38hg38GRCh38
GRCh371953,452,638 - 53,466,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361958,144,444 - 58,157,926 (-)NCBINCBI36Build 36hg18NCBI36
Celera1950,500,194 - 50,513,676 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1949,778,813 - 49,792,345 (-)NCBIHuRef
CHM1_11953,454,437 - 53,467,969 (-)NCBICHM1_1
T2T-CHM13v2.01956,031,917 - 56,045,413 (-)NCBIT2T-CHM13v2.0
Zfp141
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81102,267,194 - 102,300,911 (+)NCBIGRCr8
mRatBN7.2193,130,574 - 93,164,293 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl193,130,598 - 93,163,404 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0198,168,457 - 98,201,189 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0199,248,701 - 99,286,645 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4193,011,706 - 93,026,296 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera187,429,924 - 87,463,216 (+)NCBICelera
Cytogenetic Map1q22NCBI
LOC100627241
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1657,008,838 - 57,052,907 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_024926658   ⟹   XP_024782426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,995,399 - 59,008,648 (-)NCBI
NHGRI_mPanPan11960,911,652 - 60,926,674 (-)NCBI
Mhudiblu_PPA_v01949,888,155 - 49,901,429 (-)NCBI
PanPan1.11958,760,189 - 58,773,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034944539   ⟹   XP_034800430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,995,399 - 59,008,651 (-)NCBI
NHGRI_mPanPan11960,911,652 - 60,926,674 (-)NCBI
Mhudiblu_PPA_v01949,888,155 - 49,901,429 (-)NCBI
RefSeq Acc Id: XM_034944540   ⟹   XP_034800431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,995,399 - 59,037,345 (-)NCBI
NHGRI_mPanPan11960,911,652 - 60,955,401 (-)NCBI
Mhudiblu_PPA_v01949,888,155 - 49,930,147 (-)NCBI
RefSeq Acc Id: XM_034944541   ⟹   XP_034800432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,995,399 - 59,067,558 (-)NCBI
NHGRI_mPanPan11960,911,652 - 60,986,005 (-)NCBI
Mhudiblu_PPA_v01949,888,155 - 49,960,739 (-)NCBI
RefSeq Acc Id: XM_063600604   ⟹   XP_063456674
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,995,399 - 59,008,638 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_024782426   ⟸   XM_024926658
- Sequence:
RefSeq Acc Id: XP_034800432   ⟸   XM_034944541
RefSeq Acc Id: XP_034800431   ⟸   XM_034944540
RefSeq Acc Id: XP_034800430   ⟸   XM_034944539
RefSeq Acc Id: XP_063456674   ⟸   XM_063600604


Additional Information

Database Acc Id Source(s)
NCBI Gene ZNF816 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LOC100977156  zinc finger protein 816  ZNF816    Symbol and/or name change 5135510 APPROVED