NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6) - Rat Genome Database

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Gene: NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6) Pan paniscus
Analyze
Symbol: NDUFS6
Name: NADH:ubiquinone oxidoreductase subunit S6
RGD ID: 11725752
Description: INVOLVED IN cellular senescence (ortholog); circulatory system development (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); cervical cancer (ortholog); dopamine transporter deficiency syndrome (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v242,056,496 - 2,071,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15210,101 - 225,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v052,132,177 - 2,147,226 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.151,854,644 - 1,869,711 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl51,854,644 - 1,869,711 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NDUFS6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v242,056,496 - 2,071,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15210,101 - 225,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v052,132,177 - 2,147,226 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.151,854,644 - 1,869,711 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl51,854,644 - 1,869,711 (+)Ensemblpanpan1.1panPan2
NDUFS6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,801,407 - 1,816,048 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,801,407 - 1,816,048 (+)EnsemblGRCh38hg38GRCh38
GRCh3751,801,521 - 1,816,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,854,509 - 1,869,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 3451,854,508 - 1,882,609NCBI
Celera51,838,161 - 1,852,826 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,783,132 - 1,798,367 (+)NCBIHuRef
CHM1_151,801,142 - 1,815,808 (+)NCBICHM1_1
T2T-CHM13v2.051,716,295 - 1,731,268 (+)NCBIT2T-CHM13v2.0
Ndufs6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,467,995 - 73,476,574 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,467,957 - 73,476,661 (-)EnsemblGRCm39 Ensembl
GRCm381373,319,876 - 73,328,482 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,319,838 - 73,328,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv371373,457,324 - 73,465,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361373,785,874 - 73,794,457 (-)NCBIMGSCv36mm8
Celera1375,647,714 - 75,656,320 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1339.69NCBI
Ndufs6-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,936,402 - 28,936,955 (+)NCBIGRCr8
mRatBN7.2227,201,706 - 27,202,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,201,713 - 27,202,258 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,242,225 - 34,242,760 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,342,323 - 32,342,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0227,158,647 - 27,159,182 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0226,471,173 - 26,471,587 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl226,471,173 - 26,471,584 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0245,600,795 - 45,601,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4226,295,710 - 26,296,123 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera223,262,351 - 23,262,764 (+)NCBICelera
Cytogenetic Map2q12NCBI
Ndufs6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504893,112 - 903,282 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504893,112 - 903,282 (+)NCBIChiLan1.0ChiLan1.0
NDUFS6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13410,989,857 - 10,999,232 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3410,989,828 - 11,001,053 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3415,500,016 - 15,509,392 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03410,890,564 - 10,899,945 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3410,890,535 - 10,901,748 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13410,941,963 - 10,951,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03410,921,050 - 10,930,429 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,131,470 - 11,140,857 (-)NCBIUU_Cfam_GSD_1.0
Ndufs6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213243,983,709 - 243,996,518 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815144,994 - 158,144 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815144,994 - 157,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1678,993,913 - 79,000,006 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11678,993,909 - 79,000,001 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,609,834 - 85,615,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,643,810 - 1,658,651 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,643,822 - 1,658,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606427,105,860 - 27,120,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufs6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751873,599 - 880,266 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751873,575 - 880,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008960073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000054637   ⟹   ENSPPAP00000031772
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl51,854,644 - 1,869,711 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054641   ⟹   ENSPPAP00000031776
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl51,854,675 - 1,868,330 (+)Ensembl
RefSeq Acc Id: XM_008960073   ⟹   XP_008958321
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v242,056,496 - 2,071,685 (+)NCBI
NHGRI_mPanPan15210,101 - 225,302 (+)NCBI
Mhudiblu_PPA_v052,132,177 - 2,147,226 (+)NCBI
PanPan1.151,854,644 - 1,869,711 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008958321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031772.1
  ENSPPAP00000031776.1
Reference Protein Sequences
RefSeq Acc Id: XP_008958321   ⟸   XM_008960073
- Sequence:
RefSeq Acc Id: ENSPPAP00000031772   ⟸   ENSPPAT00000054637
RefSeq Acc Id: ENSPPAP00000031776   ⟸   ENSPPAT00000054641
Protein Domains
Zinc finger CHCC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038799 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054637.1 UniProtKB/TrEMBL
  ENSPPAT00000054641.1 UniProtKB/TrEMBL
Gene3D-CATH q5lls5 like domains UniProtKB/TrEMBL
InterPro NDUFS6 UniProtKB/TrEMBL
  Znf_CHCC UniProtKB/TrEMBL
KEGG Report pps:100985357 UniProtKB/TrEMBL
NCBI Gene NDUFS6 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 6, MITOCHONDRIAL UniProtKB/TrEMBL
  NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT UniProtKB/TrEMBL
Pfam zf-CHCC UniProtKB/TrEMBL
PIRSF CI-13KD-A UniProtKB/TrEMBL
UniProt A0A2R9BQ34_PANPA UniProtKB/TrEMBL
  A0A2R9BQ40_PANPA UniProtKB/TrEMBL