RAB44 (RAB44, member RAS oncogene family) - Rat Genome Database

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Gene: RAB44 (RAB44, member RAS oncogene family) Pan paniscus
Analyze
Symbol: RAB44
Name: RAB44, member RAS oncogene family
RGD ID: 11722974
Description: ENCODES a protein that exhibits calcium ion binding (inferred); GTP binding (inferred); GTPase activity (inferred); INVOLVED IN histamine secretion by mast cell (ortholog); histamine secretion mediated by IgE immunoglobulin (ortholog); mast cell degranulation (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,166,628 - 51,202,259 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,036,220 - 47,071,882 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,260,088 - 36,295,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,455,996 - 37,491,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,462,355 - 37,490,330 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,166,628 - 51,202,259 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,036,220 - 47,071,882 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,260,088 - 36,295,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,455,996 - 37,491,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,462,355 - 37,490,330 (+)Ensemblpanpan1.1panPan2
RAB44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,697,826 - 36,733,184 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,697,826 - 36,733,184 (+)EnsemblGRCh38hg38GRCh38
GRCh37636,665,603 - 36,700,961 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,779,991 - 36,813,461 (+)NCBINCBI36Build 36hg18NCBI36
Celera638,227,044 - 38,260,526 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,383,845 - 36,419,250 (+)NCBIHuRef
CHM1_1636,667,541 - 36,702,900 (+)NCBICHM1_1
T2T-CHM13v2.0636,518,456 - 36,553,808 (+)NCBIT2T-CHM13v2.0
Rab44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,333,102 - 29,367,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,333,119 - 29,367,954 (+)EnsemblGRCm39 Ensembl
GRCm381729,114,128 - 29,148,980 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,114,145 - 29,148,980 (+)EnsemblGRCm38mm10GRCm38
MGSCv371729,272,001 - 29,285,921 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,862,339 - 28,876,259 (+)NCBIMGSCv36mm8
Celera1729,686,716 - 29,699,710 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.14NCBI
Rab44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,166,219 - 7,200,114 (+)NCBIGRCr8
mRatBN7.2207,164,576 - 7,198,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,164,720 - 7,198,468 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0206,363,839 - 6,410,878 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,397,022 - 6,410,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,607,880 - 8,656,089 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,332,351 - 7,452,568 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera208,714,633 - 8,748,437 (+)NCBICelera
Cytogenetic Map20p12NCBI
Rab44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,220,228 - 6,246,898 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554376,223,281 - 6,250,068 (-)NCBIChiLan1.0ChiLan1.0
RAB44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,769,056 - 5,804,963 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,770,882 - 5,804,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,787,999 - 5,823,996 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,117,999 - 6,154,011 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,121,446 - 6,154,014 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,772,503 - 5,808,609 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,852,102 - 5,888,147 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,950,333 - 5,986,288 (+)NCBIUU_Cfam_GSD_1.0
Rab44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,248,071 - 41,278,972 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647622,681,324 - 22,706,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,372,600 - 32,402,736 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,372,606 - 32,402,282 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,276,005 - 37,305,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,399,866 - 35,435,599 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604436,644,658 - 36,680,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475421,072,113 - 21,092,517 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065022   ⟹   ENSPPAP00000042093
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,462,355 - 37,490,330 (+)Ensembl
RefSeq Acc Id: XM_034961982   ⟹   XP_034817873
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,172,785 - 51,201,286 (+)NCBI
NHGRI_mPanPan1647,042,421 - 47,070,899 (+)NCBI
Mhudiblu_PPA_v0636,266,276 - 36,294,740 (+)NCBI
RefSeq Acc Id: XM_057302487   ⟹   XP_057158470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,166,628 - 51,202,259 (+)NCBI
NHGRI_mPanPan1647,036,220 - 47,071,882 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034817873 (Get FASTA)   NCBI Sequence Viewer  
  XP_057158470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042093.1
Reference Protein Sequences
RefSeq Acc Id: XP_034817873   ⟸   XM_034961982
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000042093   ⟸   ENSPPAT00000065022
RefSeq Acc Id: XP_057158470   ⟸   XM_057302487
- Peptide Label: isoform X2
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065022.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene RAB44 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-44 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9CM43_PANPA UniProtKB/TrEMBL