TIGD5 (tigger transposable element derived 5) - Rat Genome Database

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Gene: TIGD5 (tigger transposable element derived 5) Pan paniscus
Analyze
Symbol: TIGD5
Name: tigger transposable element derived 5
RGD ID: 11722778
Description: ENCODES a protein that exhibits DNA binding (inferred); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tigger transposable element-derived protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,081,205 - 161,083,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,598,891 - 136,601,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,351,189 - 140,353,670 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,360,558 - 143,368,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,366,390 - 143,368,240 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TIGD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,081,205 - 161,083,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,598,891 - 136,601,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,351,189 - 140,353,670 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,360,558 - 143,368,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,366,390 - 143,368,240 (+)Ensemblpanpan1.1panPan2
TIGD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,597,831 - 143,603,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,597,831 - 143,603,224 (+)EnsemblGRCh38hg38GRCh38
GRCh378144,680,001 - 144,685,394 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,751,364 - 144,753,627 (+)NCBINCBI36Build 36hg18NCBI36
Build 348144,751,363 - 144,753,627NCBI
Celera8140,990,313 - 140,992,724 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,914,131 - 139,933,756 (+)NCBIHuRef
CHM1_18144,720,392 - 144,722,720 (+)NCBICHM1_1
T2T-CHM13v2.08144,747,243 - 144,752,636 (+)NCBIT2T-CHM13v2.0
Tigd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,781,584 - 75,786,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,781,584 - 75,786,384 (+)EnsemblGRCm39 Ensembl
GRCm381575,909,735 - 75,914,535 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,909,735 - 75,914,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv371575,740,165 - 75,744,965 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,737,015 - 75,741,789 (+)NCBIMGSCv36mm8
Celera1577,410,746 - 77,415,546 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.07NCBI
Tigd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,477,438 - 109,479,957 (+)NCBIGRCr8
mRatBN7.27107,596,724 - 107,599,243 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,596,724 - 107,599,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,336,223 - 109,338,742 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,559,901 - 111,562,420 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,505,833 - 111,508,352 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,943,057 - 116,945,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,943,057 - 116,945,576 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,835,628 - 116,838,147 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,885,759 - 113,888,278 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,919,264 - 113,922,114 (+)NCBI
Celera7103,953,722 - 103,956,241 (+)NCBICelera
Cytogenetic Map7q34NCBI
Tigd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,299,640 - 2,301,574 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,299,244 - 2,304,795 (+)NCBIChiLan1.0ChiLan1.0
TIGD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,254,327 - 37,258,521 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,254,327 - 37,256,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,210,812 - 37,215,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,726,146 - 37,730,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,726,146 - 37,728,098 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,400,416 - 37,404,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,517,387 - 37,521,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,998,621 - 38,002,814 (+)NCBIUU_Cfam_GSD_1.0
Tigd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,107,449 - 1,111,789 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,533,548 - 8,537,888 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIGD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4967,370 - 969,283 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14964,727 - 969,391 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TIGD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,818,156 - 137,820,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,818,489 - 137,820,420 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,069,778 - 2,075,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tigd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,146,295 - 13,148,244 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,143,055 - 13,148,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034966805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000032182   ⟹   ENSPPAP00000009539
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8143,366,390 - 143,368,240 (+)Ensembl
RefSeq Acc Id: XM_034966805   ⟹   XP_034822696
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27161,081,205 - 161,083,749 (+)NCBI
NHGRI_mPanPan18136,598,891 - 136,601,435 (+)NCBI
Mhudiblu_PPA_v08140,351,189 - 140,353,670 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034822696 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009539.1
Reference Protein Sequences
RefSeq Acc Id: XP_034822696   ⟸   XM_034966805
- UniProtKB: A0A2R9A2N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000009539   ⟸   ENSPPAT00000032182
Protein Domains
HTH CENPB-type   HTH psq-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028001 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032182.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro DDE_SF_endonuclease_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  HTH_CenpB_DNA-bd_dom UniProtKB/TrEMBL
  HTH_Psq UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene TIGD5 ENTREZGENE
PANTHER TIGGER TRANSPOSABLE ELEMENT-DERIVED PROTEIN 5 UniProtKB/TrEMBL
  TRANSPOSON UniProtKB/TrEMBL
Pfam CENP-B_N UniProtKB/TrEMBL
  DDE_1 UniProtKB/TrEMBL
  HTH_Tnp_Tc5 UniProtKB/TrEMBL
PROSITE HTH_CENPB UniProtKB/TrEMBL
  HTH_PSQ UniProtKB/TrEMBL
SMART CENPB UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A2R9A2N9 ENTREZGENE, UniProtKB/TrEMBL