LOC100976160 (SAP domain-containing ribonucleoprotein) - Rat Genome Database

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Gene: LOC100976160 (SAP domain-containing ribonucleoprotein) Pan paniscus
Analyze
Symbol: LOC100976160 (Ensembl: DNAJC14)
Name: SAP domain-containing ribonucleoprotein (Ensembl:DnaJ heat shock protein family (Hsp40) member C14)
RGD ID: 11718565
Description: ENCODES a protein that exhibits chromatin binding (inferred); dopamine receptor binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (inferred); membrane (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 14; DnaJ heat shock protein family (Hsp40) member C14; dnaJ homolog subfamily C member 14; DNAJC14; SAP domain containing ribonucleoprotein; SARNP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,497,625 - 38,577,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,494,380 - 38,574,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01233,093,916 - 33,159,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,818,823 - 33,879,358 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,808,532 - 33,814,616 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1233,818,823 - 33,879,358 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100976160
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,497,625 - 38,577,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,494,380 - 38,574,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01233,093,916 - 33,159,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,818,823 - 33,879,358 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,808,532 - 33,814,616 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1233,818,823 - 33,879,358 (+)Ensemblpanpan1.1panPan2
SARNP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,752,463 - 55,817,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,752,463 - 55,817,724 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,146,247 - 56,211,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,437,325 - 54,497,773 (-)NCBINCBI36Build 36hg18NCBI36
Celera1255,798,717 - 55,863,901 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,185,208 - 53,249,923 (-)NCBIHuRef
CHM1_11256,112,996 - 56,178,310 (-)NCBICHM1_1
T2T-CHM13v2.01255,719,098 - 55,784,368 (-)NCBIT2T-CHM13v2.0
Sarnp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,657,633 - 128,713,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,653,202 - 128,713,498 (+)EnsemblGRCm39 Ensembl
GRCm3810128,821,764 - 128,877,638 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,817,333 - 128,877,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,258,827 - 128,314,694 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,224,868 - 128,280,566 (+)NCBIMGSCv36mm8
Celera10131,214,346 - 131,270,179 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.16NCBI
Sarnp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,835,597 - 1,889,833 (+)NCBIGRCr8
mRatBN7.271,251,096 - 1,305,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,251,098 - 1,305,332 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx74,015,553 - 4,069,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,891,214 - 5,945,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,192,490 - 6,246,650 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,246,220 - 3,300,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,246,220 - 3,300,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.073,217,778 - 3,271,845 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,121,254 - 2,176,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,121,394 - 2,176,059 (+)NCBI
Celera71,121,855 - 1,176,089 (+)NCBICelera
Cytogenetic Map7q11NCBI
Sarnp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,402,822 - 3,451,193 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,396,443 - 3,451,193 (-)NCBIChiLan1.0ChiLan1.0
SARNP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110153,682 - 203,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10153,766 - 203,509 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10215,941 - 265,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010160,817 - 210,447 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10158,977 - 210,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110138,488 - 188,389 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010381,571 - 431,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010505,504 - 555,421 (-)NCBIUU_Cfam_GSD_1.0
Sarnp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,589,671 - 58,644,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646232,356 - 280,589 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646226,333 - 280,562 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SARNP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,199,422 - 21,261,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,203,048 - 21,262,437 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,686,457 - 22,742,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SARNP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,702,975 - 51,768,435 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,707,532 - 51,768,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037194,225,541 - 194,291,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sarnp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,200,312 - 12,254,195 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480212,200,201 - 12,260,246 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000027952   ⟹   ENSPPAP00000006543
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,808,532 - 33,814,616 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056171   ⟹   ENSPPAP00000033296
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1233,818,823 - 33,879,358 (+)Ensembl
RefSeq Acc Id: XM_008959699   ⟹   XP_008957947
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,510,654 - 38,571,105 (+)NCBI
NHGRI_mPanPan11238,507,424 - 38,567,878 (+)NCBI
Mhudiblu_PPA_v01233,093,917 - 33,154,387 (+)NCBI
PanPan1.11233,818,823 - 33,879,358 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063593039   ⟹   XP_063449109
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,497,625 - 38,571,105 (+)NCBI
RefSeq Acc Id: XM_063593040   ⟹   XP_063449110
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,498,437 - 38,507,459 (+)NCBI
RefSeq Acc Id: XR_004665675
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21038,510,631 - 38,577,864 (+)NCBI
NHGRI_mPanPan11238,507,401 - 38,574,633 (+)NCBI
Mhudiblu_PPA_v01233,093,917 - 33,159,303 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008957947 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449109 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006543.1
  ENSPPAP00000033296
  ENSPPAP00000033296.1
Reference Protein Sequences
RefSeq Acc Id: XP_008957947   ⟸   XM_008959699
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BV18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000033296   ⟸   ENSPPAT00000056171
RefSeq Acc Id: ENSPPAP00000006543   ⟸   ENSPPAT00000027952
RefSeq Acc Id: XP_063449109   ⟸   XM_063593039
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063449110   ⟸   XM_063593040
- Peptide Label: isoform X2
Protein Domains
J   SAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025261 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000039513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000027952.1 UniProtKB/TrEMBL
  ENSPPAT00000056171.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  1.10.720.30 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  Jiv UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100976160 UniProtKB/TrEMBL
NCBI Gene SARNP ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 14 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 14 UniProtKB/TrEMBL
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  Jiv90 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A2R8ZRK1_PANPA UniProtKB/TrEMBL
  A0A2R9BV18 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 LOC100976160  SAP domain-containing ribonucleoprotein  SARNP  SAP domain containing ribonucleoprotein  Symbol and/or name change 5135510 APPROVED
2023-04-20 SARNP  SAP domain containing ribonucleoprotein  DNAJC14  DnaJ heat shock protein family (Hsp40) member C14  Data merged from RGD:11678873 737654 PROVISIONAL