SUPT3H (SPT3 homolog, SAGA and STAGA complex component) - Rat Genome Database

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Gene: SUPT3H (SPT3 homolog, SAGA and STAGA complex component) Pan paniscus
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Symbol: SUPT3H
Name: SPT3 homolog, SAGA and STAGA complex component
RGD ID: 11677582
Description: ENCODES a protein that exhibits protein heterodimerization activity (inferred); transcription coactivator activity (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH cleidocranial dysplasia (ortholog); genetic disease (ortholog); metaphyseal dysplasia-maxillary hypoplasia-brachydactyly syndrome (ortholog); FOUND IN nucleoplasm (ortholog); transcription factor TFTC complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: suppressor of Ty 3 homolog; transcription initiation protein SPT3 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2559,319,591 - 59,916,681 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1655,185,516 - 55,738,622 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0644,406,978 - 44,960,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,687,038 - 46,239,155 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SUPT3H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2559,319,591 - 59,916,681 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1655,185,516 - 55,738,622 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0644,406,978 - 44,960,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,687,038 - 46,239,155 (-)NCBIpanpan1.1PanPan1.1panPan2
SUPT3H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,809,057 - 45,377,934 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,809,317 - 45,377,953 (-)EnsemblGRCh38hg38GRCh38
GRCh37644,776,794 - 45,345,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,904,447 - 45,453,648 (-)NCBINCBI36Build 36hg18NCBI36
Build 34644,904,446 - 45,453,648NCBI
Celera646,349,249 - 46,898,679 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef644,516,692 - 45,068,472 (-)NCBIHuRef
CHM1_1644,797,285 - 45,348,380 (-)NCBICHM1_1
T2T-CHM13v2.0644,643,948 - 45,212,744 (-)NCBIT2T-CHM13v2.0
Supt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,088,005 - 45,430,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,088,039 - 45,430,177 (+)EnsemblGRCm39 Ensembl
GRCm381744,777,118 - 45,119,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1744,777,152 - 45,119,290 (+)EnsemblGRCm38mm10GRCm38
MGSCv371744,914,120 - 45,256,233 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361744,240,226 - 44,582,865 (+)NCBIMGSCv36mm8
Celera1748,214,105 - 48,550,772 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1721.56NCBI
Supt3h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8923,375,889 - 23,704,229 (-)NCBIGRCr8
mRatBN7.2915,878,296 - 16,206,768 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,868,287 - 16,206,706 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0918,249,565 - 18,604,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl918,319,246 - 18,371,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0917,146,969 - 17,490,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,492,552 - 11,831,246 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera913,605,383 - 13,944,093 (-)NCBICelera
Cytogenetic Map9q12-q13NCBI
Supt3h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543710,258,783 - 10,649,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543710,207,802 - 10,649,559 (-)NCBIChiLan1.0ChiLan1.0
SUPT3H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11213,083,084 - 13,684,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1213,154,955 - 13,670,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1213,183,675 - 13,713,531 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,642,019 - 14,172,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,643,074 - 14,159,135 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11213,167,898 - 13,697,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01213,255,765 - 13,785,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01213,351,215 - 13,881,345 (-)NCBIUU_Cfam_GSD_1.0
Supt3h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,624,054 - 49,102,775 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647614,866,970 - 15,334,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647614,857,428 - 15,336,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT3H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,751,927 - 40,161,103 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,763,303 - 40,161,123 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,741,350 - 45,870,515 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUPT3H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11726,849,199 - 27,417,306 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604444,861,014 - 45,381,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Supt3h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475414,823,331 - 15,236,032 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008958690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008958691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008958692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001338235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003028305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008955665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008958691   ⟹   XP_008956939
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,872,178 (-)NCBI
NHGRI_mPanPan1655,206,059 - 55,738,233 (-)NCBI
Mhudiblu_PPA_v0644,424,558 - 44,959,392 (-)NCBI
PanPan1.1645,707,646 - 46,238,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008958692   ⟹   XP_008956940
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,872,198 (-)NCBI
NHGRI_mPanPan1655,206,059 - 55,738,233 (-)NCBI
Mhudiblu_PPA_v0644,424,558 - 44,959,610 (-)NCBI
PanPan1.1645,706,779 - 46,238,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055113659   ⟹   XP_054969634
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,872,075 (-)NCBI
NHGRI_mPanPan1655,206,059 - 55,738,247 (-)NCBI
RefSeq Acc Id: XM_057302510   ⟹   XP_057158493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,874,623 (-)NCBI
NHGRI_mPanPan1655,206,059 - 55,738,622 (-)NCBI
RefSeq Acc Id: XM_063605298   ⟹   XP_063461368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,916,586 (-)NCBI
RefSeq Acc Id: XM_063605299   ⟹   XP_063461369
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,467,457 - 59,916,681 (-)NCBI
RefSeq Acc Id: XM_063605300   ⟹   XP_063461370
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,467,226 - 59,875,423 (-)NCBI
RefSeq Acc Id: XM_063605301   ⟹   XP_063461371
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,339,262 - 59,859,822 (-)NCBI
RefSeq Acc Id: XR_003028305
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,319,591 - 59,872,198 (-)NCBI
NHGRI_mPanPan1655,185,516 - 55,738,233 (-)NCBI
Mhudiblu_PPA_v0644,406,978 - 44,959,610 (-)NCBI
PanPan1.1645,687,038 - 46,238,754 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008955665
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,319,591 - 59,874,625 (-)NCBI
NHGRI_mPanPan1655,185,516 - 55,738,603 (-)NCBI
RefSeq Acc Id: XR_010112435
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,319,591 - 59,916,586 (-)NCBI
RefSeq Acc Id: XR_010112436
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2559,328,246 - 59,916,586 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008956940   ⟸   XM_008958692
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AIQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008956939   ⟸   XM_008958691
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AIQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_054969634   ⟸   XM_055113659
- Peptide Label: isoform X4
RefSeq Acc Id: XP_057158493   ⟸   XM_057302510
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063461368   ⟸   XM_063605298
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461371   ⟸   XM_063605301
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063461370   ⟸   XM_063605300
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063461369   ⟸   XM_063605299
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030879 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038168.1 UniProtKB/TrEMBL
  ENSPPAT00000038174.1 UniProtKB/TrEMBL
  ENSPPAT00000038176.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  TFIID_TAF13 UniProtKB/TrEMBL
NCBI Gene SUPT3H ENTREZGENE
PANTHER PTHR11380 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION PROTEIN SPT3 HOMOLOG UniProtKB/TrEMBL
Pfam TFIID-18kDa UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A2R9ADV5_PANPA UniProtKB/TrEMBL
  A0A2R9AIQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AK80_PANPA UniProtKB/TrEMBL