LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Pan paniscus
Analyze
Symbol: LFNG
Name: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
RGD ID: 11668624
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (inferred); INVOLVED IN compartment pattern specification (ortholog); marginal zone B cell differentiation (ortholog); negative regulation of Notch signaling pathway involved in somitogenesis (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH genetic disease (ortholog); Rigidity and Multifocal Seizure Syndrome, Lethal Neonatal (ortholog); spondylocostal dysostosis 2 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,3-N-acetylglucosaminyltransferase lunatic fringe
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,477,996 - 7,487,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,802,701 - 55,812,142 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,781,493 - 2,790,936 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,876,721 - 2,884,926 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LFNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,477,996 - 7,487,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,802,701 - 55,812,142 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,781,493 - 2,790,936 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,876,721 - 2,884,926 (+)NCBIpanpan1.1PanPan1.1panPan2
LFNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,512,529 - 2,529,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,512,529 - 2,529,177 (+)EnsemblGRCh38hg38GRCh38
GRCh3772,552,163 - 2,568,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,526,005 - 2,535,337 (+)NCBINCBI36Build 36hg18NCBI36
Build 3472,330,737 - 2,341,302NCBI
Celera72,521,470 - 2,538,114 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,469,979 - 2,486,577 (+)NCBIHuRef
CHM1_172,551,728 - 2,568,392 (+)NCBICHM1_1
T2T-CHM13v2.072,625,971 - 2,642,596 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,600,032 - 2,616,654 (+)NCBI
Lfng
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,593,096 - 140,601,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,593,075 - 140,601,300 (+)EnsemblGRCm39 Ensembl
GRCm385140,607,341 - 140,615,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,607,320 - 140,615,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv375141,083,295 - 141,091,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365140,859,841 - 140,866,960 (+)NCBIMGSCv36mm8
Celera5137,667,846 - 137,675,959 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.15NCBI
Lfng
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,144,474 - 19,152,951 (-)NCBIGRCr8
mRatBN7.21214,030,551 - 14,038,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,018,333 - 14,039,008 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,839,113 - 14,847,134 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,462,384 - 15,470,633 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,489,324 - 14,497,345 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,117,767 - 16,126,211 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,118,634 - 16,126,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,113,805 - 18,123,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,497,704 - 14,505,723 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,527,632 - 14,535,651 (-)NCBI
Celera1215,790,243 - 15,798,262 (-)NCBICelera
Cytogenetic Map12q11NCBI
Lfng
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,773,975 - 12,784,512 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546012,773,975 - 12,784,512 (-)NCBIChiLan1.0ChiLan1.0
LFNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,631,638 - 14,640,147 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,632,691 - 14,635,485 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha616,094,444 - 16,103,246 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0614,757,824 - 14,766,634 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1614,561,780 - 14,570,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,490,186 - 14,498,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,776,050 - 14,784,860 (-)NCBIUU_Cfam_GSD_1.0
Lfng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,760,468 - 142,768,231 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823283,205 - 290,986 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936823283,207 - 290,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LFNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,810,892 - 1,820,048 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,721,044 - 1,819,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,208,304 - 2,267,857 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LFNG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12819,084,527 - 19,092,305 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660902,679,194 - 2,686,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lfng
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,392,079 - 30,404,068 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,392,342 - 30,404,003 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008973188   ⟹   XP_008971436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v267,477,998 - 7,486,694 (+)NCBI
NHGRI_mPanPan1755,802,704 - 55,811,395 (+)NCBI
Mhudiblu_PPA_v072,781,496 - 2,790,188 (+)NCBI
PanPan1.172,876,721 - 2,884,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034963535   ⟹   XP_034819426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v267,477,996 - 7,487,441 (+)NCBI
NHGRI_mPanPan1755,802,701 - 55,812,142 (+)NCBI
Mhudiblu_PPA_v072,781,493 - 2,790,936 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008971436 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819426 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001823.1
  ENSPPAP00000001831.1
  ENSPPAP00000001837.1
Reference Protein Sequences
RefSeq Acc Id: XP_008971436   ⟸   XM_008973188
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034819426   ⟸   XM_034963535
- Peptide Label: isoform X1
Protein Domains
Fringe-like glycosyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000008106 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000009085.1 UniProtKB/TrEMBL
  ENSPPAT00000009099.1 UniProtKB/TrEMBL
  ENSPPAT00000009122.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Fringe-like UniProtKB/TrEMBL
NCBI Gene LFNG ENTREZGENE
PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE LUNATIC FRINGE UniProtKB/TrEMBL
  FRINGE-RELATED UniProtKB/TrEMBL
Pfam Fringe UniProtKB/TrEMBL
UniProt A0A2R8Z9Y9_PANPA UniProtKB/TrEMBL
  A0A2R8ZAG0_PANPA UniProtKB/TrEMBL
  A0A2R8ZE15_PANPA UniProtKB/TrEMBL