Gene: LINC01913 (long intergenic non-protein coding RNA 1913) Homo sapiens
Analyze
Symbol:
LINC01913
Name:
long intergenic non-protein coding RNA 1913
RGD ID:
11569217
HGNC Page
HGNC:52732
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
PREDICTED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 41,877,555 - 41,894,046 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 41,860,155 - 41,894,050 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 42,104,695 - 42,121,186 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 41,970,975 - 41,974,683 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 2 41,944,198 - 41,960,688 (+) NCBI Celera Cytogenetic Map 2 p21 NCBI HuRef 2 41,839,405 - 41,855,892 (+) NCBI HuRef CHM1_1 2 42,034,290 - 42,050,782 (+) NCBI CHM1_1 T2T-CHM13v2.0 2 41,883,041 - 41,899,531 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 621 Count of miRNA genes: 474 Interacting mature miRNAs: 522 Transcripts: ENST00000398796, ENST00000418836, ENST00000442214 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM valueMedium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPMBelow Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
entire extraembryonic component
pharyngeal arch
High
Medium
1
108
2
1
Low
18
3
12
77
2
10
8
3
4
7
270
45
67
8
1
Below cutoff
307
867
296
124
140
49
1270
260
571
36
230
471
79
562
775
1
Sequence
RefSeq Acc Id:
ENST00000398796
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,877,554 - 41,894,050 (+) Ensembl
RefSeq Acc Id:
ENST00000418836
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,877,074 - 41,877,955 (+) Ensembl
RefSeq Acc Id:
ENST00000442214
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,877,556 - 41,893,046 (+) Ensembl
RefSeq Acc Id:
ENST00000649168
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,876,763 - 41,894,044 (+) Ensembl
RefSeq Acc Id:
ENST00000652836
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,890,348 - 41,893,454 (+) Ensembl
RefSeq Acc Id:
ENST00000653176
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,876,773 - 41,877,954 (+) Ensembl
RefSeq Acc Id:
ENST00000653206
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,860,155 - 41,894,050 (+) Ensembl
RefSeq Acc Id:
ENST00000653210
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,876,737 - 41,877,962 (+) Ensembl
RefSeq Acc Id:
ENST00000653561
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,883,631 - 41,894,043 (+) Ensembl
RefSeq Acc Id:
ENST00000656010
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,877,556 - 41,888,412 (+) Ensembl
RefSeq Acc Id:
ENST00000657200
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,860,207 - 41,894,050 (+) Ensembl
RefSeq Acc Id:
ENST00000657390
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,876,763 - 41,894,048 (+) Ensembl
RefSeq Acc Id:
ENST00000661325
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,877,556 - 41,881,087 (+) Ensembl
RefSeq Acc Id:
ENST00000664801
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 2 41,876,746 - 41,890,542 (+) Ensembl
RefSeq Acc Id:
NR_033996
RefSeq Status:
PREDICTED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 2 41,877,555 - 41,894,046 (+) NCBI CHM1_1 2 42,034,290 - 42,050,782 (+) NCBI T2T-CHM13v2.0 2 41,883,041 - 41,899,531 (+) NCBI
Sequence:
CGGGCAACGTGGAGAGATGTAGGAAGTGAACCTGAAGCCTGACACACTCAAGGTCTCGGAACCG
hide sequence
Promoters
RGD ID: 15095411 Promoter ID: EPDNEWNC_H244 Type: initiation region Name: LINC01913_1 Description: long intergenic non-protein coding RNA 1913 [Source:HGNCSymbol;Acc:HGNC:52732] SO ACC ID: SO:0000170 Source: EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing.; Paired-end sequencing. Position: Human Assembly Chr Position (strand) Source GRCh38 2 41,877,556 - 41,877,616 EPDNEWNC
Additional Information
