LINC01735 (long intergenic non-protein coding RNA 1735) - Rat Genome Database

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Gene: LINC01735 (long intergenic non-protein coding RNA 1735) Homo sapiens
Analyze
Symbol: LINC01735
Name: long intergenic non-protein coding RNA 1735
RGD ID: 11563741
HGNC Page HGNC:52523
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381208,606,115 - 208,614,122 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1208,606,564 - 208,614,295 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q32.2NCBI
CHM1_11210,052,162 - 210,059,157 (-)NCBICHM1_1
T2T-CHM13v2.01207,853,243 - 207,860,940 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LINC01735
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:230
Interacting mature miRNAs:232
Transcripts:ENST00000568112
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 11 1
Low 47 10 20 38 128 8 2 457 2 23 32 38 6 3
Below cutoff 356 73 144 112 200 41 117 30 551 25 141 202 71 82 40

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000568112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1208,606,564 - 208,614,295 (-)Ensembl
RefSeq Acc Id: XR_001738430
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381208,606,115 - 208,614,122 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007071043
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01207,853,243 - 207,860,940 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LINC01735 COSMIC
Ensembl Genes ENSG00000261453 Ensembl
GTEx ENSG00000261453 GTEx
HGNC ID HGNC:52523 ENTREZGENE
Human Proteome Map LINC01735 Human Proteome Map
NCBI Gene LINC01735 ENTREZGENE