Trav6d-3 (T cell receptor alpha variable 6D-3) - Rat Genome Database

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Gene: Trav6d-3 (T cell receptor alpha variable 6D-3) Mus musculus
Analyze
No known orthologs.
Symbol: Trav6d-3
Name: T cell receptor alpha variable 6D-3
RGD ID: 11313138
MGI Page MGI
Description: Orthologous to human TRAV9-2 (T cell receptor alpha variable 9-2).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: Gm13955
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,962,765 - 52,964,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,962,756 - 52,964,376 (+)EnsemblGRCm39 Ensembl
GRCm381452,725,308 - 52,726,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,725,299 - 52,726,919 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,344,983 - 53,346,594 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361451,647,209 - 51,649,657 (+)NCBIMGSCv36mm8
Cytogenetic Map14C2NCBI
cM Map1427.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15608191   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:120
Interacting mature miRNAs:122
Transcripts:ENSMUST00000181483, ENSMUST00000184883
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181483   ⟹   ENSMUSP00000137760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1452,962,756 - 52,964,376 (+)Ensembl
GRCm38.p6 Ensembl1452,725,299 - 52,726,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184883   ⟹   ENSMUSP00000139137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1452,964,069 - 52,964,376 (+)Ensembl
GRCm38.p6 Ensembl1452,726,612 - 52,726,919 (+)Ensembl
Protein Sequences
GenBank Protein AAL08130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000137760.2
  ENSMUSP00000139137.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000139137   ⟸   ENSMUST00000184883
RefSeq Acc Id: ENSMUSP00000137760   ⟸   ENSMUST00000181483
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B6D3-F1-model_v2 AlphaFold A0A075B6D3 1-102 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3650097 AgrOrtholog
Ensembl Genes ENSMUSG00000096600 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000181483.3 UniProtKB/TrEMBL
  ENSMUST00000184883.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:3650097 ENTREZGENE
NCBI Gene Trav6d-3 ENTREZGENE
PANTHER T CELL RECEPTOR ALPHA VARIABLE 6-4-RELATED UniProtKB/TrEMBL
  T-CELL RECEPTOR ALPHA CHAIN V REGION UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav6d-3 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B6B3_MOUSE UniProtKB/TrEMBL
  A0A075B6D3_MOUSE UniProtKB/TrEMBL