SEPTIN14P3 (septin 14 pseudogene 3) - Rat Genome Database

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Gene: SEPTIN14P3 (septin 14 pseudogene 3) Homo sapiens
Analyze
Symbol: SEPTIN14P3
Name: septin 14 pseudogene 3
RGD ID: 10450644
HGNC Page HGNC:51687
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SEPT14P3
Related Functional Gene: SEPTIN14  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383198,228,192 - 198,230,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3198,228,194 - 198,228,376 (+)EnsemblGRCh38hg38GRCh38
GRCh373197,955,063 - 197,957,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q29NCBI
T2T-CHM13v2.03200,959,893 - 200,962,477 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:117
Interacting mature miRNAs:118
Transcripts:ENST00000439401
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 1 1 1 1
Below cutoff 20 23 15 7 8 7 42 13 26 34 13 1 5 33

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000439401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3198,228,194 - 198,228,376 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SEPTIN14P3 COSMIC
Ensembl Genes ENSG00000226008 Ensembl
GTEx ENSG00000226008 GTEx
HGNC ID HGNC:51687 ENTREZGENE
Human Proteome Map SEPTIN14P3 Human Proteome Map
NCBI Gene SEPT14P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 SEPTIN14P3  septin 14 pseudogene 3  SEPT14P3    Symbol and/or name change 5135510 APPROVED